Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d22
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical ... 33 0.16
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 31 0.83
U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epiderm... 30 1.1
U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epiderm... 30 1.1
U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epiderm... 30 1.1
AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like ... 30 1.1
AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like ... 30 1.1
Z92822-9|CAL49448.1| 576|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z82094-5|CAL49446.1| 576|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 29 1.9
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 29 1.9
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr... 28 4.4
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 28 4.4
Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z68108-3|CAA92137.1| 221|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AF022969-4|AAB69889.1| 202|Caenorhabditis elegans Hypothetical
protein C29G2.6 protein.
Length = 202
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 296 CGMKCCKHKSNTDLPVSLKC--GGCRGFCFDSACPSCFG 406
C +KC +SN D+ KC C CFD +CP C G
Sbjct: 112 CALKCVA-ESNQDIFQINKCLRQDCAFHCFDGSCPKCSG 149
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -2
Query: 458 KMNRAMDMADYYNRVGIFQSRKDTLNRNRSL---DIHRILKKLEDRY 327
++N + D R I ++R+DT N+NR ++H +K++ DR+
Sbjct: 224 RLNGCISQHDIAIREEISKARRDTTNKNRDYFHNELHAAMKEIRDRF 270
>U61955-4|AAC24407.1| 772|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform b protein.
Length = 772
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 476 SCKVPCPPTKCLVDC 520
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>U61955-3|AAC24406.1| 775|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 476 SCKVPCPPTKCLVDC 520
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>U61955-2|AAM97993.1| 777|Caenorhabditis elegans Zygotic epidermal
enclosure defectiveprotein 4, isoform c protein.
Length = 777
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 476 SCKVPCPPTKCLVDC 520
S ++PCPPT CL DC
Sbjct: 465 SREIPCPPTFCLTDC 479
>AF057568-1|AAC33438.1| 772|Caenorhabditis elegans kinesin-like
protein ZEN-4b protein.
Length = 772
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 476 SCKVPCPPTKCLVDC 520
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>AF057567-1|AAC33437.1| 775|Caenorhabditis elegans kinesin-like
protein ZEN-4a protein.
Length = 775
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 476 SCKVPCPPTKCLVDC 520
S ++PCPPT CL DC
Sbjct: 463 SREIPCPPTFCLTDC 477
>Z92822-9|CAL49448.1| 576|Caenorhabditis elegans Hypothetical
protein ZK520.3b protein.
Length = 576
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 461 GKMNRAMDMADYYNRVG-IFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKPA 285
G +++A+++A+YYNRV +F + K + + +L K D A ++ C K
Sbjct: 242 GNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSK 301
Query: 284 R*PFEEKLV 258
KLV
Sbjct: 302 DKTLNNKLV 310
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical protein
ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 461 GKMNRAMDMADYYNRVG-IFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKPA 285
G +++A+++A+YYNRV +F + K + + +L K D A ++ C K
Sbjct: 1049 GNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSK 1108
Query: 284 R*PFEEKLV 258
KLV
Sbjct: 1109 DKTLNNKLV 1117
>Z82094-5|CAL49446.1| 576|Caenorhabditis elegans Hypothetical
protein ZK520.3b protein.
Length = 576
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 461 GKMNRAMDMADYYNRVG-IFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKPA 285
G +++A+++A+YYNRV +F + K + + +L K D A ++ C K
Sbjct: 242 GNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSK 301
Query: 284 R*PFEEKLV 258
KLV
Sbjct: 302 DKTLNNKLV 310
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical protein
ZK520.3a protein.
Length = 1383
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 461 GKMNRAMDMADYYNRVG-IFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKPA 285
G +++A+++A+YYNRV +F + K + + +L K D A ++ C K
Sbjct: 1049 GNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSK 1108
Query: 284 R*PFEEKLV 258
KLV
Sbjct: 1109 DKTLNNKLV 1117
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2
Query: 461 GKMNRAMDMADYYNRVG-IFQSRKDTLNRNRSLDIHRILKKLEDRYYSCAYSISCRSKPA 285
G +++A+++A+YYNRV +F + K + + +L K D A ++ C K
Sbjct: 1049 GNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNAINLLFKNGDDENCVALAVDCGIKSK 1108
Query: 284 R*PFEEKLV 258
KLV
Sbjct: 1109 DKTLNNKLV 1117
>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 290 VCCGMKCCKHKSNTDLPVSLKCG 358
+CC + C +H + T LPVSL CG
Sbjct: 14 LCCSI-CNRHFNETFLPVSLICG 35
>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 290 VCCGMKCCKHKSNTDLPVSLKCG 358
+CC + C +H + T LPVSL CG
Sbjct: 14 LCCSI-CNRHFNETFLPVSLICG 35
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 28.3 bits (60), Expect = 4.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 458 KMNRAMDMADYYNRVGIFQSRKDTLNRNRSLD 363
K NR++D D+Y+ V +F K +R RS D
Sbjct: 420 KKNRSVDSGDHYDEVAVFYKEKH--HRRRSSD 449
>Z68215-1|CAA92450.1| 517|Caenorhabditis elegans Hypothetical
protein C53B4.1 protein.
Length = 517
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 289 LHDSRLRKSWFVIIFFYF 236
L D +LR S+F+IIF YF
Sbjct: 296 LKDPKLRNSFFMIIFMYF 313
>Z68108-3|CAA92137.1| 221|Caenorhabditis elegans Hypothetical
protein T05A10.4 protein.
Length = 221
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 318 CLQHFMPQQTCTIAV*GKAGLSSSFFIFFEGLEPTMAM 205
C QHFMPQ + A L F+ +F+G + T+ M
Sbjct: 123 CPQHFMPQS----VLGSNAQLFKRFYFYFDGHDSTVHM 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,564,977
Number of Sequences: 27780
Number of extensions: 254283
Number of successful extensions: 772
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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