Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d22
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 527 CFGLKIKLNKKPKFEPSPVEVTP 595
           CF LK K  K P F     +VTP
Sbjct: 545 CFSLKFKNKKLPVFLAEIWDVTP 567


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 381 SKQKPRHPPHFKETGRSV 328
           + +KPR   HFK+  R+V
Sbjct: 436 TSKKPRRKFHFKQIARAV 453


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 597 RGVTSTGEGSNFGFLFSFIFNPK 529
           RG+T+   G N GFL     NP+
Sbjct: 73  RGLTAVFLGLNLGFLAWAKHNPR 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,717
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)