Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d21
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371 115 3e-26
01_01_1032 - 8174958-8175101,8175625-8175923,8176277-8176409,817... 30 1.3
04_01_0227 - 2877303-2877659,2877755-2877897,2878102-2878183,287... 29 3.0
01_01_1030 + 8158901-8159050,8159178-8159310,8159410-8159708,816... 29 3.0
04_04_1004 + 30035704-30035934,30036030-30036287,30036382-300364... 29 4.0
05_01_0326 - 2558237-2558344,2558605-2558706,2558867-2558944,255... 28 7.0
04_04_0843 - 28619064-28619280,28619730-28619825,28620349-286207... 28 7.0
05_02_0077 - 6374282-6374313,6374448-6374524,6375219-6375478,637... 27 9.2
>07_01_1192 - 11313934-11314221,11314296-11314413,11317220-11317371
Length = 185
Score = 115 bits (277), Expect = 3e-26
Identities = 57/134 (42%), Positives = 81/134 (60%), Gaps = 17/134 (12%)
Frame = +3
Query: 264 VEYIGFAAGYKIMERLTREWPRFKDELDTMKFICTDFWTCIYKKQIDNLRTNHQGVYVLQ 443
+E IGF G+++ ER T E PRF D L+ +KFIC DFW+ ++KKQIDNL+TNH+G +VLQ
Sbjct: 37 IEAIGFQVGHQLTERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQ 96
Query: 444 DNAFRFLTNFS-----------------NGHQYLEYAPRYVAYTCGLIRGGLANLCINSI 572
DN FR+LT S G + + + CG+IRG L NL I+
Sbjct: 97 DNHFRWLTRVSVDPSVESMDATENDSTTLGDSAAQTTSMLLYFPCGIIRGALTNLGISCS 156
Query: 573 XTAEVQSMPSCKFH 614
TA++ ++P+C+ H
Sbjct: 157 VTADMSNLPACELH 170
>01_01_1032 -
8174958-8175101,8175625-8175923,8176277-8176409,
8176525-8176671
Length = 240
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 213 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 377
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 12 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 69
Query: 378 TCIYKKQIDNLRTNHQGVYVLQDNAFRFLT 467
I+K + ++ ++ H + N RFL+
Sbjct: 70 ELIHKVRPEDQKSVHSQKFCASTNGMRFLS 99
>04_01_0227 -
2877303-2877659,2877755-2877897,2878102-2878183,
2878289-2878291
Length = 194
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/67 (20%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 153 RMADDIIFELLHSEIINYSIEKFKNN-DNGEKETDLSVVEYIGFAAGYKIMERLTREWPR 329
+M+ + E + + + ++++K + N +K+ + + I GYK++++ R+W R
Sbjct: 64 KMSSSVKIESVVPDDLMAKMDRYKKDLQNMKKQKEAVESKQIKQEEGYKLLQQEQRKWKR 123
Query: 330 FKDELDT 350
K+ L++
Sbjct: 124 DKENLNS 130
>01_01_1030 +
8158901-8159050,8159178-8159310,8159410-8159708,
8160147-8160287
Length = 240
Score = 29.1 bits (62), Expect = 3.0
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +3
Query: 213 EKFKNNDNGEKETDLSVVEYIGFAAGYKIMERL-----TREWPRFKDELDTMKFICTDFW 377
+K+++ GE E D V +G Y ++ +L T+EWP E + + T
Sbjct: 13 DKYRSFMYGEGEKD--TVWRLGSPPNYDVVNKLFEEERTKEWPEGSLEEKVQRLLKTWEM 70
Query: 378 TCIYKKQIDNLRTNHQGVYVLQDNAFRFL 464
++K + ++ ++ H + N RFL
Sbjct: 71 ELVHKVRPEDQKSVHSQKFCSSTNGMRFL 99
>04_04_1004 +
30035704-30035934,30036030-30036287,30036382-30036479,
30036574-30037137,30037232-30037484,30037576-30037758,
30037839-30038465
Length = 737
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 432 YVLQDNAFRFLTNFSNGHQYLEYAPR--YVAYTCGLIRGGLANLCI 563
Y+ + A FLT+F GH Y++ PR ++ G I G N+ +
Sbjct: 499 YISMNQAVSFLTDFKLGH-YMKIPPRSMFLVQFIGTIVAGTVNMSV 543
>05_01_0326 -
2558237-2558344,2558605-2558706,2558867-2558944,
2559024-2559089,2559885-2559975,2560414-2560490,
2560905-2561114,2561202-2561319,2561824-2561921,
2562037-2562102,2562189-2562351,2563542-2563674,
2563760-2563793
Length = 447
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 210 IEKFKNNDNGEKETDLSVVEYIGFAAGYKIMERLTRE 320
I FKN +ET +VE++ + G+K +ER++++
Sbjct: 188 ITAFKNKAPTTEETMTKIVEFVQQSKGWKNVERVSKD 224
>04_04_0843 -
28619064-28619280,28619730-28619825,28620349-28620720,
28620849-28621161,28621183-28621393,28621478-28621681,
28622328-28622726
Length = 603
Score = 27.9 bits (59), Expect = 7.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Frame = +3
Query: 411 RTNHQGVYVLQDNAFRFL---TNFSNG-HQYLEYAPRYVAYTCGLIRGGLANLC 560
R HQG + + F F T F +G QY+E +YV GL+R GL C
Sbjct: 147 RKGHQGWMKQEGSYFIFPGGGTMFPDGAEQYIEKLAQYVPLKSGLLRTGLDMGC 200
>05_02_0077 -
6374282-6374313,6374448-6374524,6375219-6375478,
6376036-6376278,6376374-6376391
Length = 209
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +3
Query: 420 HQGVYV----LQDNAFRFLTNFSNGHQYLEYAPRYVAYTCGLIRGGLANLCINSIXTAE 584
HQG Y+ Q +++F N LE+ P ++ LIR LAN+ I AE
Sbjct: 23 HQGQYIDGLSPQLPPLHLISSFPNHSLLLEHTPLFLIIISSLIREELANMHIYKEQEAE 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,422,272
Number of Sequences: 37544
Number of extensions: 294224
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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