Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d20
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1176 + 10112257-10113126 32 0.32
03_04_0174 - 18044516-18046327 29 2.3
04_03_0221 + 12890347-12890432,12890712-12890844,12891581-128916... 28 4.0
03_02_0294 + 7176906-7177532 28 4.0
02_05_0207 + 26778403-26778927 28 4.0
08_02_0899 + 22401302-22401694 28 5.2
04_03_0985 - 21438036-21438116,21438373-21438495,21438903-214389... 28 5.2
12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746 27 6.9
06_03_0395 - 20354713-20355570 27 6.9
06_02_0011 - 10569471-10572245 27 6.9
02_04_0216 + 20986231-20988021 27 6.9
01_06_1229 + 35551522-35552169 27 6.9
01_06_1217 + 35485182-35485949 27 6.9
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 27 6.9
10_08_0019 - 14167952-14171059 27 9.1
07_01_0622 - 4625246-4627759 27 9.1
01_05_0252 - 19959347-19959541,19960307-19960402,19961028-199611... 27 9.1
>06_01_1176 + 10112257-10113126
Length = 289
Score = 31.9 bits (69), Expect = 0.32
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Frame = -1
Query: 476 SFALHYLCAPWTTARS-----AEPSSAASDTAVPTAVVRAG 369
SFA H + P+ ARS A ++AA+D A PTAV+ AG
Sbjct: 219 SFAAHSISPPFAAARSSDGPAAAAAAAAADWAPPTAVLDAG 259
>03_04_0174 - 18044516-18046327
Length = 603
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/70 (25%), Positives = 29/70 (41%)
Frame = -1
Query: 497 NFDSIHISFALHYLCAPWTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV* 318
+FDS + +PWT + A ++ + A A SS+ + S PPTR+
Sbjct: 260 SFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAGAAASSSSSSSSSTPPTRLH 319
Query: 317 TISTSRVHAT 288
+ S T
Sbjct: 320 ILDLSNTFCT 329
>04_03_0221 +
12890347-12890432,12890712-12890844,12891581-12891607,
12892285-12892650
Length = 203
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 504 FIQF*LDSHFFCVT-LFMRTMDHSKKRRALQCSLRYSRAHSCS 379
FI + LD+H CV T+ R + C+LR R+ SCS
Sbjct: 145 FIAWCLDNHSDCVDEATFLTLARPADRDFIPCTLRLDRSSSCS 187
>03_02_0294 + 7176906-7177532
Length = 208
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -1
Query: 311 STSRVHATGTNLTAAIHSIGQGTARARHRPLTTQT 207
+TS V A GTN TAA + R R PL+T T
Sbjct: 29 ATSAVVARGTNATAAAANATVMARRGRSSPLSTAT 63
>02_05_0207 + 26778403-26778927
Length = 174
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 473 FALHYLCAPWTTARSAEPSSAASDTAVPTAVV--RAGYSSTVAV 348
F+LH + A + S P++A D+++P+AVV R G S++ +
Sbjct: 9 FSLHVVLAGLPPSMSLAPAAARHDSSLPSAVVVARVGPLSSIVL 52
>08_02_0899 + 22401302-22401694
Length = 130
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +3
Query: 177 PQLDMPVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYC 317
P D+ V L G +G P +Y CC GPC V G C
Sbjct: 14 PVGDLQVAKLALLVAG--NGFISPSSYLRRCCDDDGPCFVDGAGERC 58
>04_03_0985 -
21438036-21438116,21438373-21438495,21438903-21438995,
21439176-21439388,21439589-21439687,21440248-21440317,
21442549-21442619,21442817-21442954,21443034-21443132,
21444061-21444144,21444268-21444324,21444594-21444683,
21444886-21445026,21445778-21445882,21445962-21446114,
21446215-21446316,21446404-21446562,21447039-21447222,
21447336-21447418,21447523-21447588,21447736-21447793,
21447903-21448003,21448269-21448355,21449063-21449185,
21449285-21449364,21449857-21450066,21450159-21450270,
21450709-21450927,21451356-21451726,21451866-21451965,
21452544-21452752,21453232-21453337,21453435-21453767
Length = 1439
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +1
Query: 13 HITSSCIRLKFTKTHQHVTKFNQTFFYFIFLLYLSCC*YRNCP 141
H T+ C + +T+Q++ + N+ F L L C NCP
Sbjct: 850 HYTTDCYQSYSERTNQNLKRLNEDVIDFDLLEDLICYIDENCP 892
>12_02_0190 + 15170991-15171369,15172048-15172273,15172626-15172746
Length = 241
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -3
Query: 489 LDSHFFCVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRLLLHGSRAYLRTANTSLNNK 310
LD + +T+F T+ HS K + R RA + S + + G ++T+L N
Sbjct: 139 LDMAYLMITVFSSTIQHSSKDVGVPPEYRIRRAVNTSKEK-VSPGDSDIDTESSTNLQNS 197
Query: 309 HLSRARNRDQLD 274
+ R Q+D
Sbjct: 198 SVIRGAYDMQID 209
>06_03_0395 - 20354713-20355570
Length = 285
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = +3
Query: 174 SPQLDMPVRNCCLGCQGP---MSGPCGPLAYRMDCC 272
+P L+ P CC C+GP ++ G + + CC
Sbjct: 132 APPLEAPANGCCRRCRGPSTAVATATGAPSTSLPCC 167
>06_02_0011 - 10569471-10572245
Length = 924
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 485 IHISFALHYLCAPWTTARSAEPSSAASDT 399
+H+ A+H LC + A S P + DT
Sbjct: 556 VHVLIAIHVLCGMASPASSVSPQNRTEDT 584
>02_04_0216 + 20986231-20988021
Length = 596
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 458 LCAPWTTARSAEPSSAASDTAVPTAVVRA 372
L PW A +A P+SAA+ +AV V A
Sbjct: 5 LTPPWPAAAAAAPASAAAASAVTVEAVLA 33
>01_06_1229 + 35551522-35552169
Length = 215
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 285 PCCVHARGAYCSNSCWRCGDMHGYRGGVAGSY 380
PCCV + SC+ ++HG G GSY
Sbjct: 186 PCCVFVQET--DPSCYSVCNVHGEESGAQGSY 215
>01_06_1217 + 35485182-35485949
Length = 255
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 449 PWTTARSAEPSSAASDTAVPTAVVRAGYS 363
PW R + PSSAA+ + TA+ A S
Sbjct: 4 PWVKTRPSSPSSAAASPSPSTALAAAAAS 32
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 431 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPP 330
++EP++AA+ A A YSS+ SAPP
Sbjct: 28 ASEPAAAAAAVAASDAAAATDYSSSAGDPSSAPP 61
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +1
Query: 211 WVVRGLCLA-RAVPWPIEWIAAVKLVPV 291
W G C+ AV WPI W AVK +PV
Sbjct: 991 WGQWGACVGIAAVSWPIGW--AVKCIPV 1016
>07_01_0622 - 4625246-4627759
Length = 837
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 181 NWTCLYVIAVWVVRGLC 231
NW+ Y IA+ V RGLC
Sbjct: 632 NWSTRYQIAIGVARGLC 648
>01_05_0252 -
19959347-19959541,19960307-19960402,19961028-19961132,
19961220-19961439,19961515-19961584,19961659-19962181,
19962621-19962672,19963644-19963867,19963955-19964022,
19965005-19965231,19965747-19965864,19965938-19966058
Length = 672
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 217 VRGLCLARAVPWPIEWIAAVKLVPVACTREVLIVQTRVGGAEI 345
VRG C + A+P + + L P+A E + + R+GG +
Sbjct: 14 VRGCCRSAAIPLHLPPSSFSLLSPIAKGSESTVYEARLGGERV 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,872,508
Number of Sequences: 37544
Number of extensions: 282860
Number of successful extensions: 918
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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