Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d20
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 37 0.008
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 33 0.094
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 33 0.094
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 33 0.094
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 32 0.29
Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical pr... 30 1.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 29 1.5
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 29 1.5
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 2.7
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 2.7
AL110482-7|CAB54388.1| 106|Caenorhabditis elegans Hypothetical ... 28 3.5
AL110482-8|CAE17990.1| 193|Caenorhabditis elegans Hypothetical ... 28 4.7
Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical pr... 27 6.2
AL132846-1|CAB60342.1| 102|Caenorhabditis elegans Hypothetical ... 27 6.2
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 27 6.2
Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 27 8.1
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 27 8.1
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 27 8.1
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 27 8.1
AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear recep... 27 8.1
AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical... 27 8.1
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.1
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 27 8.1
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 37.1 bits (82), Expect = 0.008
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRC 338
C GC G G CG R CC CC R C+ C C
Sbjct: 72 CCGCGGGGGGGCGCCCCRPKCCCCCRRCCTCCRTCCCTRCCTCC 115
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 33.5 bits (73), Expect = 0.094
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRC 338
C GC G G CG R CC CC R C+ C C
Sbjct: 72 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 114
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 33.5 bits (73), Expect = 0.094
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRC 338
C GC G G CG R CC CC R C+ C C
Sbjct: 73 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 115
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 33.5 bits (73), Expect = 0.094
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRC 338
C GC G G CG R CC CC R C+ C C
Sbjct: 74 CCGCGGG-GGGCGCCCCRPRCCCCCRRCCTCCRTCCCTRCCTCC 116
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSNSCWRC 338
C GC G G CG R CC P CC R C+ C C
Sbjct: 54 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 98
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +3
Query: 204 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRCG 341
CC C+ C CC PCC G C C CG
Sbjct: 73 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCCGC-GCGCGCGCCGCG 117
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSNSCWRC 338
C GC G G CG R CC P CC R C+ C C
Sbjct: 56 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 100
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +3
Query: 204 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRCG 341
CC C+ C CC PCC G C C CG
Sbjct: 75 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCC---GCGCGCGCCGCG 117
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGP--CCVHARGAYCSNSCWRC 338
C GC G G CG R CC P CC R C+ C C
Sbjct: 59 CCGCGGG-GGGCGCCCCRPRCCCCCRPKCCCTCCRTCCCTRCCTCC 103
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/46 (30%), Positives = 15/46 (32%)
Frame = +3
Query: 204 CCLGCQGPMSGPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRCG 341
CC C+ C CC PCC G C C CG
Sbjct: 78 CCCCCRPKCCCTCCRTCCCTRCCTCCRPCCC---GCGCGCGCCGCG 120
>Z82264-7|CAB05164.3| 499|Caenorhabditis elegans Hypothetical
protein C49C3.13 protein.
Length = 499
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/95 (25%), Positives = 34/95 (35%)
Frame = -1
Query: 482 HISFALHYLCAPWTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTS 303
HI + Y CA TT + +S + T T ++T + PT T +T+
Sbjct: 236 HIKYDTSYTCASTTTVST---TSTVTTTKPTTTTTTPTTTTTTPTTTTTTPTTTPTTTTT 292
Query: 302 RVHATGTNLTAAIHSIGQGTARARHRPLTTQTAIT 198
T T T + P TT TA T
Sbjct: 293 TPTTTTTESTTTETTSTTTPTTTTTAPTTTTTAST 327
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Frame = +3
Query: 225 PMSGPCGPLAYRMDCCGQVG---PCCVHARGAYCSNSCWRCGDMHGYRGGVAG 374
PM PC P C V PC V CS C CG GY GG G
Sbjct: 259 PMPIPCPPPPPACSCPPPVTMYQPCMVPQYVPRCSGGCGGCGG--GYGGGYGG 309
>U41014-4|AAK32946.3| 557|Caenorhabditis elegans Hypothetical
protein C06G1.5 protein.
Length = 557
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -1
Query: 446 WTTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGT 282
W R+ SAAS T + V + +++ +PP R ++ SR++ GT
Sbjct: 13 WRLLRNRTNVSAASATQIQADVTPTKSAHPAELNVVSPPKRTASVPASRLNLNGT 67
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 29.5 bits (63), Expect = 1.5
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -1
Query: 443 TTARSAEPSSAASDTAVP--TAVVRAGYSSTV-AVHISAPPTRV*TISTSRVHATGTNLT 273
+TA S+ P S T+VP T +G S+TV + + A T V + + +TG+ +T
Sbjct: 1501 STAGSSSPQPTVSSTSVPSSTGATSSGSSTTVGSSTVGATQTSVSSSTVPNTGSTGSTVT 1560
Query: 272 -AAIHSIGQGTARARHRPLTT 213
+ S G++ + P +T
Sbjct: 1561 NPSTSSSTSGSSSTQSIPSST 1581
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 29.5 bits (63), Expect = 1.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 497 NFDSIHISFALHYLCAPWTTARSAEPSSAASDTA 396
NFD I S ++HY+ +T ARS ++ A++ A
Sbjct: 66 NFDRIEPSTSIHYILESFTEARSTSEATEAANFA 99
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 28.7 bits (61), Expect = 2.7
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +1
Query: 196 YVIAVW-VVRGLCLAR--AVPWPIEWIAAVK---LVPVACTREVLIVQTRVGGAEI 345
+V+ +W V G C++R + P+ +A V VAC E L V + VGG E+
Sbjct: 1017 FVVQMWDVTNGKCISRMGGLMAPVSTLAITSNDAFVVVACEDETLKVFSTVGGQEL 1072
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = -1
Query: 431 SAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*TISTSRVHATGTNLTAAIHSIG 252
S+ ++ AS T PT+ + SS + + T V T+ST+ ++G + + +IG
Sbjct: 483 SSTVTTVASSTIAPTSSQES--SSIASSSAPSQSTTVITVSTTATVSSGQSTSTFGTTIG 540
Query: 251 QGTARARHRPLTTQ 210
QG++ TTQ
Sbjct: 541 QGSSFGSSTIQTTQ 554
Score = 27.1 bits (57), Expect = 8.1
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = -1
Query: 443 TTARSAEPSSAASDTAVPTAVVRAGYSSTV-AVHISAPPTRV*TISTSRVHATGTNLTAA 267
+TA S+ P AS T+VP++ STV + + + + + + + + +TG+ +T
Sbjct: 749 STAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNTGSTGSTVTNQ 808
Query: 266 IHSIGQGTARARHRPLTTQTA 204
+ S A + P+ + TA
Sbjct: 809 LASSSTYGASST-EPIASSTA 828
>AL110482-7|CAB54388.1| 106|Caenorhabditis elegans Hypothetical
protein Y39G8B.9 protein.
Length = 106
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +3
Query: 279 VGPCCVH-ARGAYCSNSCWRCGDMHGY 356
+GP CV+ AR +C+N W C Y
Sbjct: 40 LGPNCVNWARNGFCTNCQWTCAQRKHY 66
>AL110482-8|CAE17990.1| 193|Caenorhabditis elegans Hypothetical
protein Y39G8B.10 protein.
Length = 193
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +3
Query: 234 GPCGPLAYRMDCCGQVGPCCVHARGAYCSNSCWRCGDMHGY 356
G G + D G G C A+ +C+N ++C D Y
Sbjct: 125 GGLGGIRGHRDLGGLEGVCHAWAKNGFCNNDWYKCSDRIKY 165
>Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical
protein C49C3.1 protein.
Length = 706
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 443 TTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTR 324
T RS SSAA D + T +VR SS A P R
Sbjct: 5 TQRRSPSDSSAAEDQRIATTIVRDSGSSKEIEESQADPCR 44
>AL132846-1|CAB60342.1| 102|Caenorhabditis elegans Hypothetical
protein Y43D4A.1 protein.
Length = 102
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 443 TTARSAEPSSAASDTAVPTAVVRAGYSSTVAVHISAPPTR 324
T RS SSAA D + T +VR SS A P R
Sbjct: 5 TQRRSPSDSSAAEDQRIATTIVRDSGSSKEIEESQADPCR 44
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +3
Query: 192 PVRNCCLGCQGPMSGPCGPLAYRMDCCGQVGPC 290
P+ C +GC G G CG CG G C
Sbjct: 751 PMLMCGVGCDGAACGACGACG-ACGACGGCGGC 782
>Z93374-3|CAB07558.2| 363|Caenorhabditis elegans Hypothetical
protein C06C6.4 protein.
Length = 363
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = -3
Query: 471 CVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRL 367
C F R K + C +RY +H C R+
Sbjct: 26 CAAFFRRYFHSKKSVISCTCQIRYQNSHPCRECRI 60
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPC-----CVHARGAYCSNSCWRCGDMHG 353
C GCQG CG A+ C + G C R +C + W G+ HG
Sbjct: 2031 CQGCQG---CHCGTAAFNTQCNVENGQCTCRPGATGMRCEHCEHGYWNYGE-HG 2080
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPC-----CVHARGAYCSNSCWRCGDMHG 353
C GCQG CG A+ C + G C R +C + W G+ HG
Sbjct: 2031 CQGCQG---CHCGTAAFNTQCNVENGQCTCRPGATGMRCEHCEHGYWNYGE-HG 2080
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 483 SHFFCVTLFMRTMDHSKKRRALQCSLRYSR 394
SH FC+ + + D KKR L C +YS+
Sbjct: 35 SHTFCL-MCLSKHDQRKKRHCLICKTKYSK 63
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -1
Query: 422 PSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*T----ISTSRVHATGTNLTAAIHSI 255
PSSA T PT V A +++ A ++ PT T + TS GT+ TA +
Sbjct: 588 PSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLT 647
Query: 254 GQGTARARHRPLTTQTAIT 198
TA P ++ TA T
Sbjct: 648 TPTTAPV--NPTSSTTAPT 664
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.1 bits (57), Expect = 8.1
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = -1
Query: 422 PSSAASDTAVPTAVVRAGYSSTVAVHISAPPTRV*T----ISTSRVHATGTNLTAAIHSI 255
PSSA T PT V A +++ A ++ PT T + TS GT+ TA +
Sbjct: 644 PSSATVPTTPPTTVTVAATTTSKAPVVTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLT 703
Query: 254 GQGTARARHRPLTTQTAIT 198
TA P ++ TA T
Sbjct: 704 TPTTAPV--NPTSSTTAPT 720
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 270 CGQVGPCCVH-ARGAYCSNSCWRCGDMHGYRGGVAG 374
C P C A+ +C+N C+ C D Y G
Sbjct: 117 CKDCSPNCASWAKRGFCTNCCYSCQDRERYCAKTCG 152
>AF273815-1|AAG15164.1| 365|Caenorhabditis elegans nuclear receptor
NHR-63 protein.
Length = 365
Score = 27.1 bits (57), Expect = 8.1
Identities = 10/35 (28%), Positives = 14/35 (40%)
Frame = -3
Query: 471 CVTLFMRTMDHSKKRRALQCSLRYSRAHSCSTSRL 367
C F R K + C +RY +H C R+
Sbjct: 28 CAAFFRRYFHSKKSVISCTCQIRYQNSHPCRECRI 62
>AF016681-15|AAB66168.1| 172|Caenorhabditis elegans Hypothetical
protein F22E5.2 protein.
Length = 172
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 443 TTARSAEPSSAASDTAVPTAVVRAGYSSTVAVH 345
TT S P T +PTA G+SS +H
Sbjct: 130 TTDSSTVPQLVTETTEIPTATTTPGWSSKTELH 162
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPC-----CVHARGAYCSNSCWRCGDMHG 353
C GCQG CG A+ C + G C R +C + W G+ HG
Sbjct: 2031 CQGCQG---CHCGTAAFNTQCNVENGQCTCRPGATGMRCEHCEHGYWNYGE-HG 2080
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +3
Query: 207 CLGCQGPMSGPCGPLAYRMDCCGQVGPC-----CVHARGAYCSNSCWRCGDMHG 353
C GCQG CG A+ C + G C R +C + W G+ HG
Sbjct: 2031 CQGCQG---CHCGTAAFNTQCNVENGQCTCRPGATGMRCEHCEHGYWNYGE-HG 2080
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,984,576
Number of Sequences: 27780
Number of extensions: 249957
Number of successful extensions: 796
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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