Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d19
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb...    27   1.6  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   5.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   5.0  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.8  

>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 436

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = -2

Query: 299 IPNSYCDVTNVFIKMIHISNNVIMNRNVMSIFCRNISNGGLISQSEETLQDVYSTLK 129
           +   +C V N+  K   +S+   MN     +    + NGG+  +  +T   +++ LK
Sbjct: 236 LQGDHCSVMNIISKASFLSSKAGMNSGWNDLDSLEVGNGGMSFEEYKTHFTMWAILK 292


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 269  VFIKMIHISNNVIMNRNVMSIFCRNISNGGLISQSEETLQ 150
            VF+  +H+  N   N    + F   +   G++S+ E  +Q
Sbjct: 1590 VFVSWVHLLRNSATNDETKAAFVYQLHKQGILSEPELCIQ 1629


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -2

Query: 248 ISNNVIMNRNVMSIFCRNISNGGLISQ 168
           ++NNV +     ++F  ++SNG ++SQ
Sbjct: 202 LNNNVFVGSKNTTLFTIDVSNGDIVSQ 228


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 408 CRREDQIYNKIYRRECEEEWL 470
           CRR  Q  N  + REC ++WL
Sbjct: 538 CRRLKQC-NHFFHRECIDQWL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,664
Number of Sequences: 5004
Number of extensions: 36930
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)