Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d19
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    29   2.6  
AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine re...    28   4.5  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    27   7.9  
AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormo...    27   7.9  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    27   7.9  

>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 340 LKNNYRLMPREKNHMINNLSVFDVVEKIKYITKSIDENAKR 462
           L  +Y  +  E+N +++    ++++E I+ +T  ID+  K+
Sbjct: 777 LTASYLELTNERNTLVHRQEYYNIIETIRQVTSEIDQLGKQ 817


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/41 (24%), Positives = 24/41 (58%)
 Frame = +1

Query: 340 LKNNYRLMPREKNHMINNLSVFDVVEKIKYITKSIDENAKR 462
           L  +Y  +  E+N +++    ++++E I+ +T  ID+  K+
Sbjct: 777 LTASYLELTNERNTLVHRQEYYNIIETIRQVTSEIDQLGKQ 817


>AF016436-4|AAC25895.2|  331|Caenorhabditis elegans Serpentine
           receptor, class j protein39 protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 513 FFXSVQNSENVINFITIPLRILVYRFCYIFDLLD 412
           +F     + +V+N I +P+ I+ YR+C+I  L D
Sbjct: 46  YFALFNLTYSVVN-IVVPIDIITYRYCFIVILRD 78


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 311 KSLFIPNSYCDVTNVFIKMIHISNNVIMNRNVMSIFCRNISN---GGLISQSEETLQDVY 141
           K  FIP       +V  +++ +  + +    +MS+ C  ++    GGLI +  E  QD+ 
Sbjct: 290 KYFFIPREMFH-EDVISELVKVQPDDVETTYLMSVVCLQLTGKRYGGLIQEEMEQFQDIL 348

Query: 140 S 138
           S
Sbjct: 349 S 349


>AC006777-2|AAK72308.3|  326|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform a protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 311 KSLFIPNSYCDVTNVFIKMIHISNNVIMNRNVMSIFCRNISN---GGLISQSEETLQDVY 141
           K  FIP       +V  +++ +  + +    +MS+ C  ++    GGLI +  E  QD+ 
Sbjct: 204 KYFFIPREMFH-EDVISELVKVQPDDVETTYLMSVVCLQLTGKRYGGLIQEEMEQFQDIL 262

Query: 140 S 138
           S
Sbjct: 263 S 263


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 311 KSLFIPNSYCDVTNVFIKMIHISNNVIMNRNVMSIFCRNISN---GGLISQSEETLQDVY 141
           K  FIP       +V  +++ +  + +    +MS+ C  ++    GGLI +  E  QD+ 
Sbjct: 302 KYFFIPREMFH-EDVISELVKVQPDDVETTYLMSVVCLQLTGKRYGGLIQEEMEQFQDIL 360

Query: 140 S 138
           S
Sbjct: 361 S 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,612
Number of Sequences: 27780
Number of extensions: 195496
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)