Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d18
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    27   3.2  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   7.3  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   7.3  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   9.7  
SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase |Schizosacch...    25   9.7  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 168 VKARPDCLVIEGKHYESPSLDR 233
           +K+RPDCL++ G   + P + R
Sbjct: 262 LKSRPDCLIVAGTSCKIPGVKR 283


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -3

Query: 179 SSLHS*FVFIEFMNIDTQLELIFSYF-NIRP*ISCLRN 69
           ++LH+ ++F  F++ DT  +LI + + N  P ++ L N
Sbjct: 276 TTLHARYIFASFISRDTTYQLIIAIWKNTHPFLTTLAN 313


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 346 QSSHESILSETSKTDQFGELTSGANQLKSSKLSQLF 239
           +S+H S L++T ++DQ    + GA +  S   S LF
Sbjct: 43  KSNHGSSLTDTGESDQLSLKSFGAIRQPSQHRSSLF 78


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 44  ITSIYKRNSSSNTKSKVEY*NRK 112
           +TS+++R+ SSNT +  +Y +RK
Sbjct: 109 VTSLHRRSLSSNTSTPRKYHSRK 131


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +3

Query: 579 SHFIN-YITIIIIKAQCLLTK 638
           ++FIN +I  +IIK  CL+TK
Sbjct: 504 NYFINIFIIFLIIKHMCLITK 524


>SPBC16C6.01c ||SPBC543.11c|lysine methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 16/66 (24%)
 Frame = -2

Query: 252 YPSYLNFYLNWVIHNASLQSPGSLV*P------------SLLIR----LY*IYEHRHSAG 121
           Y +  NFY+ W+     + +   LV P            S++IR    LY I +H  S G
Sbjct: 284 YETNRNFYMEWIHKKRIINTQELLVTPTTYANDKSETLRSVMIRQPMDLYIITDHGPSYG 343

Query: 120 TYLFLF 103
            YL+LF
Sbjct: 344 LYLYLF 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,256
Number of Sequences: 5004
Number of extensions: 43414
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)