Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d18
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327...    29   4.3  
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554...    28   7.6  

>04_04_1265 -
           32231511-32231813,32231906-32232024,32232511-32232721,
           32232870-32232942,32233329-32233603,32233684-32233831,
           32233906-32234143,32234325-32234457,32234852-32235045,
           32235114-32235218,32235332-32236640
          Length = 1035

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -1

Query: 457 IMLSSPFLVWIFKCCTIAQXXXXXXXXXICYKGILDHQSSHESILSETSKTD--QFGELT 284
           ++L S FLVW++KC  ++             +GIL + S+   +  E  +     FGE+ 
Sbjct: 457 LLLMSIFLVWLYKCRVLSGKRHQNKVVQK--RGILGYLSASNELGDENLELPFVSFGEIA 514

Query: 283 SGANQLKSSKL 251
           +  N      +
Sbjct: 515 AATNNFSDDNM 525


>03_02_0085 -
           5539188-5539388,5539576-5539714,5540108-5540279,
           5541119-5541165,5541450-5541527,5542113-5542177,
           5543108-5543155,5543393-5543473,5543586-5543783
          Length = 342

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 386 CYIHNLLQRNLRPPIVP 336
           CY+HN++ R+L  PI P
Sbjct: 148 CYVHNVVNRSLGKPIFP 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,976
Number of Sequences: 37544
Number of extensions: 223887
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)