Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d18
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.48 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    25   0.48 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.48 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   2.0  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   2.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 367 YKGILDHQSSHESILSETSKTDQFGELTSGANQLKSSKLSQLFEFLSKLGD 215
           +KG+LD +   E  + ET+  +   +  S  + +K + +S   +    LGD
Sbjct: 288 FKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGD 338


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 367 YKGILDHQSSHESILSETSKTDQFGELTSGANQLKSSKLSQLFEFLSKLGD 215
           +KG+LD +   E  + ET+  +   +  S  + +K + +S   +    LGD
Sbjct: 203 FKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGD 253


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 367 YKGILDHQSSHESILSETSKTDQFGELTSGANQLKSSKLSQLFEFLSKLGD 215
           +KG+LD +   E  + ET+  +   +  S  + +K + +S   +    LGD
Sbjct: 522 FKGVLDVKDVEEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGD 572


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 596 HYNNNYQSSMLTYKV 640
           +YNNNY S  L Y +
Sbjct: 313 NYNNNYNSKKLYYNI 327


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 596 HYNNNYQSSMLTYKV 640
           +YNNNY S  L Y +
Sbjct: 324 NYNNNYNSKKLYYNI 338


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -3

Query: 215 FIMLPFNHQAVWSSLHS*FVFIEFMNIDTQLELIFSYFNIR 93
           FI+L   H   W+SL +  +     N+   +  I   ++IR
Sbjct: 11  FILLQMIHLIAWASLENTGISDRLENVTQTISRILDGYDIR 51


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = -2

Query: 264 NH-PNYPSYLNFYLNW 220
           NH PNY    N+Y+ W
Sbjct: 663 NHSPNYDQVTNWYMGW 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,748
Number of Sequences: 438
Number of extensions: 3089
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)