Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d14
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 33 0.14
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 31 0.74
02_05_0576 + 30097139-30097235,30097532-30097630,30097855-300979... 30 1.3
06_01_0611 + 4420873-4422207 29 3.0
06_01_0768 + 5742938-5743196,5743291-5744729 29 3.9
02_05_0577 - 30100084-30100251,30100474-30100548,30100631-301007... 28 5.2
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 33.5 bits (73), Expect = 0.14
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = +3
Query: 216 GLEPRLKGGGSDWYIPPE--DLLKGRAVLKPIQKCHLAQLSFEGIAYFGERIVEAHHMEM 389
G+E +G G+ WY+PPE DL K + + + ++ + FG R H
Sbjct: 616 GMELTSQGAGTYWYLPPECFDLSKTPFISSKVDVWSAGVMFYQML--FGRRPF-GHDQTQ 672
Query: 390 ER--EKDRILHDNDVKW--KEAIDAKCKKLWEECST 485
ER +D I++ V++ K A+ + K+L C T
Sbjct: 673 ERILREDTIINARRVEFPSKPAVSNEAKELIRRCLT 708
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 31.1 bits (67), Expect = 0.74
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 337 KVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQLTLNVKNFGRNVQRKPQTG-IPKL 513
KVLL L KE+ K I W+ M S G R VK F +V G + L
Sbjct: 2452 KVLLELMKETPKQILWQ--------EMWCASEGFRNFNSKVKRFSSSVAAMSMIGHVLGL 2503
Query: 514 FDRHLKSFL 540
DRHL + L
Sbjct: 2504 GDRHLDNIL 2512
>02_05_0576 +
30097139-30097235,30097532-30097630,30097855-30097929,
30098242-30098328,30098553-30098627,30098940-30099026,
30099204-30099220
Length = 178
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +1
Query: 301 QY-KNVILRNSVLKVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQLTLNVKNFGRN 477
QY +N+ R + + L E+ESLK+ W+ +E + S+G+ + +N++N N
Sbjct: 51 QYLENIKRRTKMAQSGLVSERESLKNTNWQNKETMKKEQSGIKSDGQTKKDMNLQNL-EN 109
Query: 478 VQRK 489
++R+
Sbjct: 110 IKRR 113
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +1
Query: 307 KNVILRNSVLKVLLTLEKESLKHITWKWREKRIGYSMIMTSNGKRQLTLNVKNFGRNVQR 486
+N+ R + + L E ESLK+ W+ +E + S+G+ + +N++N N++R
Sbjct: 108 ENIKRRTKMAQSGLVSESESLKNTNWQNKEAMKKEQSGIKSDGQTKKDMNLQNL-ENIKR 166
Query: 487 K 489
+
Sbjct: 167 R 167
>06_01_0611 + 4420873-4422207
Length = 444
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 450 AKCKKLWEECSTEAANRNTQAIRQAFKEFSV--VYMTSLTRIESLMSHA 590
A K WE EAA+ + A R FSV ++MTS TR E + + A
Sbjct: 319 ASKKGAWEAAVIEAASADAAAARLNRDSFSVSKIWMTSATRKEDVRTAA 367
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 387 FPCDVLQRFFLQSKQYLQN*VAQDDIFVLVSKLPCLLADLLVGCTNH 247
FP LQ ++ + +N V D VS+LP + DL GCT H
Sbjct: 230 FPIKNLQDLTGEAPESYRNLVQSDRPATSVSELPYVFVDLDHGCTYH 276
>02_05_0577 -
30100084-30100251,30100474-30100548,30100631-30100755,
30101538-30101609,30102016-30102108,30102333-30102419,
30103049-30103135,30103448-30103522,30104142-30104238
Length = 292
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +1
Query: 346 LTLEKESLKHITWKWREKRIGYSMIMTSNGKRQLTLNVKNFGRNVQRK 489
L E+ESLK+ W+ +E + S+G+ + +N++N N++R+
Sbjct: 34 LVSERESLKNTNWQNKETMKKEQSGIKSDGQNKKDMNLQNL-ENIKRR 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,138,049
Number of Sequences: 37544
Number of extensions: 348587
Number of successful extensions: 881
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -