Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d12
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    28   0.89 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   2.0  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   6.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.3  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 376 GPKPARYTCPSCKASITTRVEYVSATKTH 462
           G KP   + PSCK   T R E +   +TH
Sbjct: 28  GEKPFECSYPSCKKRFTRRDELIRHVRTH 56


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 247 SGVDIAETTQNPPPYNNQM*TDLYHVVPTVPTQQFITVQAPQ 372
           SG+D  E TQ  PP ++   + +    P  P+++     +P+
Sbjct: 148 SGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKIFHYLSPR 189


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 38  GLCISY*KIPFFCF*NKYLFCVFHKQWLIVYAFTYSESSETDVV 169
           GL ++   IPF+     + F  F  Q+L +Y+F++      +V+
Sbjct: 69  GLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVI 112


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 284 GGF*VVSAMSTPDKSA*CCTRGIFILFYHTVLPN 183
           GG  +VSA+ T    +  CTRG+ + F    L N
Sbjct: 284 GGIQIVSALFTDIPRSVYCTRGMLLGFLQRSLKN 317


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 289 YNNQM*TDLYHVVPTVPTQQFITVQAPQM 375
           YN  +  + +HVVP++P  +FI +    M
Sbjct: 838 YNEPIHQNAFHVVPSMPFVKFIRLDENSM 866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,535
Number of Sequences: 5004
Number of extensions: 51834
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)