Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d12
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    31   0.69 
03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216           29   3.7  
03_01_0063 + 502441-502657,502765-503027,503115-503528                 29   3.7  
02_03_0036 + 14186407-14186566,14188241-14188548                       28   6.4  
11_06_0703 + 26444128-26446215,26446525-26447226                       27   8.5  
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337...    27   8.5  
03_01_0296 + 2284385-2285629,2287632-2288594                           27   8.5  

>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +1

Query: 277 NPPPYNNQM*TDLYHVVPTVPTQQFI-TVQAPQMGPKPARYTCPSCKASITTRVEY 441
           N PPY   M   +Y+ +P VP +      +  Q  P P     P  +A I T+VEY
Sbjct: 284 NGPPYPGPM-PPMYYYMPAVPMEPMRGPPRFVQNQPPPHPVLSPELRAKILTQVEY 338


>03_01_0297 + 2295291-2296369,2310477-2310702,2312269-2313216
          Length = 750

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 287 HTITRCKQIYIMSFPLYRLNSSSQFKRRKWAL 382
           H  TRC  I ++   +   +++SQF+   WAL
Sbjct: 123 HEFTRCSNIVVLGLYVLYYSNASQFRYPLWAL 154


>03_01_0063 + 502441-502657,502765-503027,503115-503528
          Length = 297

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -3

Query: 468 TQVGFRRRYIFYSGR--DGRFAAWAGIACRLRAHLRRLNCD-ELLSRYSGNDMI 316
           T  G R+  +FYSGR  +GR  AW     RL  H    N + + + +  G+D +
Sbjct: 120 TVAGARKTLVFYSGRAPNGRKTAWVMHEFRLLHHHHHPNPNIQNMQQQEGDDWV 173


>02_03_0036 + 14186407-14186566,14188241-14188548
          Length = 155

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 286 PYNNQM*TDLYHVVPTV--PTQQFITVQAPQMGPKPA 390
           P   ++  D +H  P V  PTQ+   +QAP + P+ A
Sbjct: 84  PPQGELGMDYWHAAPQVTQPTQEMGAIQAPNVTPQQA 120


>11_06_0703 + 26444128-26446215,26446525-26447226
          Length = 929

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 382 KPARYTCPSCKASITTRVE 438
           KP R  CPSC  +I TR E
Sbjct: 100 KPTRCNCPSCHCNIWTRHE 118


>05_03_0359 -
           12929240-12929376,12931379-12933497,12933594-12933773,
           12933905-12934118,12934199-12934551,12934642-12934864,
           12934953-12935230,12935456-12935725,12935817-12935939,
           12936025-12936102,12936351-12936527,12936597-12936686,
           12937010-12937120,12937397-12937585,12937667-12937858,
           12937990-12938076,12938153-12938257,12938340-12938396,
           12938471-12938545,12938647-12938763,12938876-12939000,
           12939082-12939121,12939241-12939291,12939382-12939569,
           12939808-12939901,12939976-12940149,12940242-12940337,
           12940597-12940689,12940794-12940955,12941034-12941240,
           12941356-12941728,12942379-12942436,12943096-12943171,
           12943874-12943941,12944321-12944642
          Length = 2433

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 313 LYHVVPTVPTQQFITVQAPQMGPKPARYTC 402
           L + VP +P    + ++AP   P+PA ++C
Sbjct: 82  LIYRVPFIPCLLQLQIRAPHADPRPAGFSC 111


>03_01_0296 + 2284385-2285629,2287632-2288594
          Length = 735

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 287 HTITRCKQIYIMSFPLYRLNSSSQFKRRKWAL 382
           H  TRC  I ++   +   + +SQF+   WAL
Sbjct: 122 HEFTRCSNIVVLGLYVRYYSHASQFRYPLWAL 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,147,610
Number of Sequences: 37544
Number of extensions: 338845
Number of successful extensions: 813
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)