Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24d12
(590 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein pr... 36 0.081
BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha f... 36 0.081
BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha f... 36 0.081
BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-indu... 36 0.081
BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein. 36 0.081
AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane... 36 0.081
BC067279-1|AAH67279.1| 483|Homo sapiens zinc finger protein 774... 30 5.3
BC007372-1|AAH07372.1| 297|Homo sapiens tripartite motif-contai... 29 9.3
AK054802-1|BAB70809.1| 297|Homo sapiens protein ( Homo sapiens ... 29 9.3
AB209243-1|BAD92480.1| 311|Homo sapiens tripartite motif-contai... 29 9.3
>BX537543-1|CAD97778.1| 161|Homo sapiens hypothetical protein
protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC101969-1|AAI01970.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC101402-1|AAI01403.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC101401-1|AAI01402.1| 161|Homo sapiens LPS-induced TNF-alpha
factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC096066-1|AAH96066.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC096065-1|AAH96065.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC096063-1|AAH96063.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC046154-1|AAH46154.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC039840-1|AAH39840.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC016491-1|AAH16491.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC008309-1|AAH08309.1| 161|Homo sapiens lipopolysaccharide-induced
TNF factor protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC000053-1|AAH00053.1| 161|Homo sapiens LITAF protein protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>AB034747-1|BAB32547.1| 161|Homo sapiens small integral membrane
protein of lysosome/late endosome protein.
Length = 161
Score = 36.3 bits (80), Expect = 0.081
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 515 PYCGKSCRNATHYCPNCSAYIGSY 586
P+C + ++ HYCPNC A +G+Y
Sbjct: 135 PFCVDALQDVDHYCPNCRALLGTY 158
>BC067279-1|AAH67279.1| 483|Homo sapiens zinc finger protein 774
protein.
Length = 483
Score = 30.3 bits (65), Expect = 5.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 340 TQQFITVQAPQMGPKPARYTCPSCKASITTRVEYVSATKTH 462
+ FIT Q +G +P Y CP C + R +++ +TH
Sbjct: 415 SSHFITHQRIHLGDRP--YRCPECGKTFNQRSHFLTHQRTH 453
>BC007372-1|AAH07372.1| 297|Homo sapiens tripartite
motif-containing 52 protein.
Length = 297
Score = 29.5 bits (63), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 358 VQAPQMGPKPARYTCPSCKASITTR 432
+ P P P ++TCP C+ S T R
Sbjct: 169 IHPPPSLPLPGQFTCPQCRKSFTRR 193
>AK054802-1|BAB70809.1| 297|Homo sapiens protein ( Homo sapiens
cDNA FLJ30240 fis, clone BRACE2002091, weakly similar to
ZINC-FINGER PROTEIN RFP. ).
Length = 297
Score = 29.5 bits (63), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 358 VQAPQMGPKPARYTCPSCKASITTR 432
+ P P P ++TCP C+ S T R
Sbjct: 169 IHPPPSLPLPGQFTCPQCRKSFTRR 193
>AB209243-1|BAD92480.1| 311|Homo sapiens tripartite
motif-containing 52 variant protein.
Length = 311
Score = 29.5 bits (63), Expect = 9.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 358 VQAPQMGPKPARYTCPSCKASITTR 432
+ P P P ++TCP C+ S T R
Sbjct: 194 IHPPPSLPLPGQFTCPQCRKSFTRR 218
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,355,418
Number of Sequences: 237096
Number of extensions: 1868244
Number of successful extensions: 7644
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7644
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6211568660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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