Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d12
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    29   0.045
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.0  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 113 VYEIRRTDIYFKNKKKVFFNSLYINQRHLIKY 18
           ++ I R D +FKN KKV F+ + I   +L  Y
Sbjct: 84  LHNIWRPDCFFKNAKKVTFHEMSIPNHYLWLY 115


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 255 YARQIGLMLH*RHFHFILP 199
           +   IG+ LH  H+H + P
Sbjct: 199 WREDIGINLHHWHWHLVYP 217


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 232 HQADLSGVDIAETTQNPPPYNNQM*TDLYHV 324
           H  D   VD+   TQ  PP    + T + H+
Sbjct: 283 HHPDPGEVDLPPETQPTPPSATLVGTTITHL 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,497
Number of Sequences: 438
Number of extensions: 3846
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)