Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d07
         (478 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF513718-1|AAP47175.1|  923|Homo sapiens E3 ubiquitin ligase pro...    30   4.8  
U58856-1|AAC51365.1|  401|Homo sapiens unknown protein.                29   8.3  

>AF513718-1|AAP47175.1|  923|Homo sapiens E3 ubiquitin ligase
           protein.
          Length = 923

 Score = 29.9 bits (64), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 157 EPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAPKDKMDF 279
           +PQ S PN +K A +  +L +LG  +P  + +    DK  +
Sbjct: 70  KPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSY 110


>U58856-1|AAC51365.1|  401|Homo sapiens unknown protein.
          Length = 401

 Score = 29.1 bits (62), Expect = 8.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 214 KGWPPLSQISQSWA-PMIGALPSVHRVGLWHRENFVPGRWNSAATLVGSPSVCLSSRA 44
           KGW   +Q+S  W  P  G L S H V   HR + + G+ N  +     P+     RA
Sbjct: 280 KGWAE-TQLSAPWRFPFWGGLRSCHLVLCPHRNHMLDGKGNETSFSPEPPAQACFIRA 336


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,960,925
Number of Sequences: 237096
Number of extensions: 1768344
Number of successful extensions: 4811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4811
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4213781852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)