Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d06
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   0.91 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   2.1  
SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    26   3.7  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   6.4  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   8.4  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.4  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 69  KKVRFKSCFVKSCVVLLYDS-NKSPFCPNILDSPVPENVFLIIVFSIDS 212
           K+  ++   ++ C    Y++ NKS     + DS   E++FLI   S+ S
Sbjct: 102 KEPEYQDQLIRGCFAAFYNNINKSHISKQLKDSRKIEDMFLIFASSVSS 150


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 460 HFSCS*RTGSKSVESFVCSRISLKASSERQRHDQQIPHRF 341
           H++C  +   K V   + S+ S  ASSE ++ + +IPH F
Sbjct: 438 HYTCHKKCYPKVVTKCI-SKSSDSASSEYEKINHRIPHHF 476


>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 78  RFKSCFVKSCVVLLYDSNKSPFCPNILDSP 167
           +F++ F+K CV++    NK     +ILD P
Sbjct: 43  QFEADFLKKCVLIPTSYNKEDLPKDILDCP 72


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 228 GLVHCNYRLKIRLLKIRFPEPGC 160
           GL H N +  IR L I+FP+ GC
Sbjct: 44  GLPHPN-KFAIRELSIKFPQLGC 65


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 66  IKKVRFKSCFVKSCV-VLLYDS 128
           +KK R+  CFV SC+ V ++D+
Sbjct: 380 LKKPRYTVCFVVSCIFVSIFDT 401


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -2

Query: 365 RSANSS*VLAVCIASHFTSLTCQYFLSSSTQFRS*FSIAAMSSW 234
           +S + S +    +  HF  L  ++FL  +  F S  +    SSW
Sbjct: 53  KSPDESTLTDTIVVRHFPDLVMEFFLPEAYPFNSPPTFFLKSSW 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,654
Number of Sequences: 5004
Number of extensions: 44232
Number of successful extensions: 124
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)