Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d06
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    28   4.8  
03_06_0775 - 36174098-36174204,36174540-36174594,36174690-361747...    28   4.8  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    27   8.5  
04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337     27   8.5  
02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    27   8.5  

>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +3

Query: 96  VKSCVVLLYDSNKSPFCPNILDSPVPENVFLIIVFSIDSCNEQAPEPGRHCSDGESAPEL 275
           ++ C+ LL DSN+ P    +  S +P  V  I+    +  ++  P+     +D    P L
Sbjct: 734 LEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESLADPSEYPNL 793


>03_06_0775 -
           36174098-36174204,36174540-36174594,36174690-36174741,
           36174947-36175028,36175110-36175204,36175339-36175727
          Length = 259

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 229 LNQEDIAAMENQLR-NCVEDDRKYWQVNDVK 318
           LN++D   +EN +  +C+ DD  Y+++ D+K
Sbjct: 87  LNEKDSKRLENLIAPDCIIDDNAYYKLLDIK 117


>12_02_0858 +
           23740589-23743233,23743362-23743503,23744778-23744990,
           23745083-23745190,23745378-23745587,23745881-23746055,
           23746197-23746264
          Length = 1186

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -3

Query: 274 NSGADSPSLQCLPGSGACSLQLSIENTIIKNTFSGTGLSRILG 146
           +S  +S S++C PGSG+ S  +        NT SG G S +LG
Sbjct: 568 SSQLNSASVKCSPGSGSSSTTMGPPRPF--NTVSG-GASSLLG 607


>04_03_0502 - 16604289-16605374,16605546-16605716,16607044-16607337
          Length = 516

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 225 APEPGRHCSDGESAPELRRRRQKILAS 305
           AP P     + E AP LRRR ++++A+
Sbjct: 5   APAPAAGAREDEDAPALRRRLRRLVAA 31


>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = +3

Query: 90  CFVKSCVVLLYDSNKSPFCPNILDSPVPENVFLIIV 197
           CF+  C+++ +D+       ++LD P+   ++ +IV
Sbjct: 219 CFLARCIMMCFDAFDKKADLDVLDHPILNFIYYLIV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,083,633
Number of Sequences: 37544
Number of extensions: 270877
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)