Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d06
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70311-10|CAA94377.3|  602|Caenorhabditis elegans Hypothetical p...    30   1.1  
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        28   4.4  
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    28   4.4  
AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p4...    28   4.4  
Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical p...    27   5.8  
AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic ac...    27   5.8  
AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical ...    27   5.8  
AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical ...    27   5.8  
AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic ac...    27   5.8  
AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z70311-10|CAA94377.3|  602|Caenorhabditis elegans Hypothetical
           protein T25B9.6 protein.
          Length = 602

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
 Frame = +1

Query: 196 YFQSIVAM--NKPLNQEDIAAMENQLRNCVEDDRKYWQVNDVKCDAI 330
           +F+ IV M    PLNQ + A +++ +RN +E+D K+   N  KC+ I
Sbjct: 286 FFRGIVNMVPTLPLNQNERADIDHVIRN-IEEDSKF--ENKYKCELI 329


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/58 (20%), Positives = 30/58 (51%)
 Frame = +3

Query: 126 SNKSPFCPNILDSPVPENVFLIIVFSIDSCNEQAPEPGRHCSDGESAPELRRRRQKIL 299
           S++ P  P +  +P+P N   ++  ++DSC + +     +   GE +  +R+  + ++
Sbjct: 119 SSQPPPTPTVNPTPIPPNAGAVLTTAMDSCQQISHVLQCYQQGGEDSDFVRKAIESLV 176


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/58 (20%), Positives = 30/58 (51%)
 Frame = +3

Query: 126 SNKSPFCPNILDSPVPENVFLIIVFSIDSCNEQAPEPGRHCSDGESAPELRRRRQKIL 299
           S++ P  P +  +P+P N   ++  ++DSC + +     +   GE +  +R+  + ++
Sbjct: 114 SSQPPPTPTVNPTPIPPNAGAVLTTAMDSCQQISHVLQCYQQGGEDSDFVRKAIESLV 171


>AF016676-3|AAG24101.2|  494|Caenorhabditis elegans Cytochrome p450
           family protein 33C5 protein.
          Length = 494

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = -1

Query: 474 FLFFDIFRVRSALVPSPSNLLFVVGFL*R-PQVSGRDTISKFLIGFGGVYSVAFHVINLP 298
           FLF +++  R +L P P+ L F+   L    +  G +   ++   FGGVY+  F + N+P
Sbjct: 13  FLFHELYWKRRSLPPGPTPLPFMGNTLAMLLEKPGYECFRRWTKQFGGVYT--FWMGNIP 70

Query: 297 VFSVVFY 277
              +  Y
Sbjct: 71  YVIIGSY 77


>Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic
           acetylcholine receptorlarge isoform protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic
           acetylcholine receptor protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -1

Query: 441 ALVPSPSNLLFVVGFL*RPQVSGRDTISKFLIGFGGVYSVAFHVINLPVFS 289
           ALV S  NL+ +V F    Q+    TIS + +    V  +A  VI++P+F+
Sbjct: 76  ALVTSLGNLMVMVSFKIDKQLQ---TISNYFLFSLAVADIAIGVISIPMFT 123


>AC024844-8|AAK29951.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.9 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 48  KWFVINIKKVRFKSCFVKSC-VVLLYDSNKSPFCPNILDSPVPENVFLIIVFSI 206
           K+F +  + +  KS  ++   VVL    + SPF  NI +     N FL IV  +
Sbjct: 45  KFFAVKCEALNMKSSLLRQMSVVLASIHHPSPFFTNIEERGTVPNRFLFIVMPL 98


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,967,462
Number of Sequences: 27780
Number of extensions: 257371
Number of successful extensions: 801
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)