Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d01
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm recept...    28   5.1  
Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>U50309-1|AAG24137.1|  335|Caenorhabditis elegans Seven tm receptor
           protein 129 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -3

Query: 192 ALCI*ILPCDRIFLYLVVNSCFKGSIYYCHIVQSYNDVI---LM*IPFFMV*LF*FKMSN 22
           ALCI +L    I+ Y+ V  C  G +YY   ++ YN  I   ++ I + +   F F  + 
Sbjct: 99  ALCISMLATHFIYRYVAV--CRHGKLYYFDGIKIYNLFIPPTILFIVWTLSIYFNFGPNQ 156

Query: 21  VKKSF 7
           +KK F
Sbjct: 157 IKKDF 161


>Z81575-2|CAB04639.1|  339|Caenorhabditis elegans Hypothetical
           protein R08H2.2 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 251 CRTATLYEDVQLHLDRQSLTPSVYEYYLVTVFF 153
           CRTA L   + + L  Q++ P V+ Y  + +FF
Sbjct: 240 CRTADLQNQLMIALIVQAVIPIVFMYIPILLFF 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,100,088
Number of Sequences: 27780
Number of extensions: 191809
Number of successful extensions: 456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)