Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24d01
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   1.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.3  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   8.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.3  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 290 LPSHGLRIKLISKYVLFCM 346
           +PS  L + L+ KY+LF M
Sbjct: 288 IPSTSLALPLLGKYLLFTM 306


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 165 DRIFLYLVVNSCFKGSI 115
           DRIFL++   +C  G++
Sbjct: 547 DRIFLWIFTVACVLGTV 563


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 436 GHVGFNDLITFILLSTMTSII 374
           GH  FN +++ IL  T  +++
Sbjct: 298 GHTSFNGMLSHILQKTTLNML 318


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 460 SVTTSAFPGHVGFNDLITFILLSTMTSII 374
           S+T  +FPG +    L  FIL   ++S+I
Sbjct: 92  SITLISFPGELLMRLLKMFILPLIVSSLI 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,329
Number of Sequences: 438
Number of extensions: 2379
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)