Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c20
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    27   1.9  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    25   5.7  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    25   5.7  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    25   5.7  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    25   7.5  
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces...    25   7.5  

>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 187 SKPSMQTPESDISRSVTPLRPGIRRRAYDE 276
           S PS+   ESD S + TP    IRR  +DE
Sbjct: 33  STPSIDMNESDCSGTGTPSEERIRRLRWDE 62


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 186 FKTKYADAGVRYKPICYSPSTGYPQTC 266
           FK         +KP  Y PS  +P TC
Sbjct: 32  FKEHLTSRSPYHKPYFYGPSIDFPTTC 58


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 378 RELAANIFSILQ-DRSECFCPCHGGHSPHTCSLLLTPKALR 497
           R+L+  I +++   R  CFCP    +    C+ + TP+  R
Sbjct: 493 RKLSVIIENVISGSRFRCFCPKENCYFMFACAGIRTPRTAR 533


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 429 FCPCHGGH 452
           FCPCHG H
Sbjct: 190 FCPCHGSH 197


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 135 ESHLQSLEDLPLTHYTHFK 191
           E  L + E+LPL+H++H +
Sbjct: 195 EDQLSAREELPLSHFSHIE 213


>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 451

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +1

Query: 241 LRPGIRRRAYDE*SPSLMLLSSWRHSRAAVDRIEYRNARKR-RVNLKES*LPISSLYYKI 417
           L+P   +R Y    PS++ +    +   ++   E+ N R+R    L+E  L    +   +
Sbjct: 43  LQPDTVQRLYQCAVPSMIYVPPMINEAISIQHEEFNNRRRRLSAALREDKLDALIMEPTV 102

Query: 418 GLNVFARVT 444
            ++ FA +T
Sbjct: 103 SMDYFANIT 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,960
Number of Sequences: 5004
Number of extensions: 47098
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)