Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c20
         (558 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312     28   5.8  
06_03_1150 + 28022633-28023374,28023501-28023565                       28   5.8  
01_04_0019 - 15134494-15135863,15135966-15136083,15136226-151362...    28   5.8  

>06_03_1155 - 28065126-28065139,28065268-28065324,28065571-28066312
          Length = 270

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 363 PFPCIPVFNSIDSGSAVPPGA 301
           PFP IP+  S   G A PP A
Sbjct: 77  PFPLIPIGGSSGGGGAAPPSA 97


>06_03_1150 + 28022633-28023374,28023501-28023565
          Length = 268

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 363 PFPCIPVFNSIDSGSAVPPGA 301
           PFP IP+  S   G A PP A
Sbjct: 77  PFPLIPIGGSSGGGGAAPPSA 97


>01_04_0019 -
           15134494-15135863,15135966-15136083,15136226-15136278,
           15136293-15137271,15138980-15139054
          Length = 864

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 131 SRISSPEFRRFAVNALHAFQNQVCR 205
           +R SS  F++FAVN  +AF  + CR
Sbjct: 818 ARKSSSVFKKFAVNVAYAFLRKNCR 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,970,955
Number of Sequences: 37544
Number of extensions: 319566
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)