Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c20
         (558 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p...    29   3.0  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical ...    27   9.1  

>AF039053-18|AAC25881.2|  495|Caenorhabditis elegans Cytochrome p450
           family protein 33C2 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 396 YWQLALF*IYPPFPC-IPVFNSIDSGSAVPPGAEQHE 289
           YW+   F   PP PC +PVF ++ S +  PPG E  E
Sbjct: 19  YWKRRNF---PPGPCPLPVFGNLLSIANPPPGYEAFE 52


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 282  TVPHVAQLLEAQPSRCR 332
            T+ H++QLLEA  SRCR
Sbjct: 1634 TLGHISQLLEALQSRCR 1650


>AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical
           protein F53A3.1 protein.
          Length = 156

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 383 LSFKFTRRFLAFRYSILSTA-ARLCLQELSNMRDGDHSS*ARLRIP 249
           +SF F      F   +LS A + + + ++ NMRDG H      R+P
Sbjct: 71  MSFNFAAMLCNFVLMVLSLAFSGILIWDICNMRDGPHKIKYHDRLP 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,758,489
Number of Sequences: 27780
Number of extensions: 268352
Number of successful extensions: 533
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)