Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c20
(558 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 25 0.69
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.8
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 22 3.7
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 22 4.8
DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex det... 21 8.4
DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein. 21 8.4
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 8.4
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 8.4
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 8.4
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 8.4
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 8.4
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 8.4
AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex det... 21 8.4
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 8.4
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 24.6 bits (51), Expect = 0.69
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 366 PPFPCIPVFNSIDSGSAVPPGAEQHE 289
PP P +P S GSA P E H+
Sbjct: 180 PPEPPVPTVTSACVGSAYTPLKEDHD 205
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 22.6 bits (46), Expect = 2.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 207 AGVRYKPICYSPSTG 251
AGV Y P+ +PSTG
Sbjct: 841 AGVIYPPVIGTPSTG 855
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 22.2 bits (45), Expect = 3.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -2
Query: 137 FWIKPRSAP 111
FWIKP +AP
Sbjct: 266 FWIKPEAAP 274
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 21.8 bits (44), Expect = 4.8
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 340 EYRNARKRRVNLKES*LPISSLYYKIGLNVFARVTAVIHLTRALYY*LRRHYVASV*FTF 519
EY+ K VN E S YY F+ ++ L R + + + +Y+ S+
Sbjct: 189 EYKLVEKW-VNSSEIFYTTSQQYYGHFAGNFSSISITFKLAREMGFFMMDYYIPSILIVV 247
Query: 520 IS 525
IS
Sbjct: 248 IS 249
>DQ325067-1|ABD14081.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325066-1|ABD14080.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325065-1|ABD14079.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325064-1|ABD14078.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325063-1|ABD14077.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325062-1|ABD14076.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ325061-1|ABD14075.1| 152|Apis mellifera complementary sex
determiner protein.
Length = 152
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 70 RRERGRSREHRIIPSHYI 87
>DQ071552-1|AAY82248.1| 495|Apis mellifera anarchy 1 protein.
Length = 495
Score = 21.0 bits (42), Expect = 8.4
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 150 SLEDLPLTHYTHFK 191
+L LP THY H K
Sbjct: 39 TLNWLPRTHYDHLK 52
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
>AY352276-1|AAQ67417.1| 385|Apis mellifera complementary sex
determiner protein.
Length = 385
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 303 RRERGRSREHRIIPSHYI 320
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.0 bits (42), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -1
Query: 528 RRDKGESNRRDVVPSELI 475
RR++G S ++PS I
Sbjct: 319 RRERGRSREHRIIPSHYI 336
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,331
Number of Sequences: 438
Number of extensions: 3114
Number of successful extensions: 20
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -