Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c19
(503 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 37 0.009
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 37 0.009
At3g05830.1 68416.m00654 expressed protein 31 0.58
At2g32235.1 68415.m03939 expressed protein 30 1.0
At3g58840.1 68416.m06558 expressed protein 29 1.3
At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger) fa... 29 1.8
At5g03780.1 68418.m00343 expressed protein 29 2.4
At5g26770.2 68418.m03191 expressed protein 28 3.1
At5g26770.1 68418.m03190 expressed protein 28 3.1
At3g14690.1 68416.m01858 cytochrome P450, putative similar to GB... 28 3.1
At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa... 28 3.1
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 28 3.1
At1g79640.1 68414.m09286 protein kinase family protein contains ... 28 3.1
At1g13330.1 68414.m01547 expressed protein similar to nuclear re... 28 3.1
At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containi... 28 4.1
At3g16730.1 68416.m02136 expressed protein ; expression supporte... 28 4.1
At5g16790.1 68418.m01966 expressed protein 27 5.4
At1g79200.1 68414.m09234 expressed protein 27 5.4
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 27 5.4
At4g01840.1 68417.m00241 outward rectifying potassium channel, p... 27 7.2
At2g47760.1 68415.m05962 ALG3 family protein contains Pfam profi... 27 7.2
At1g28000.1 68414.m03429 hypothetical protein 27 7.2
At1g22260.1 68414.m02782 expressed protein 27 7.2
At5g27160.1 68418.m03241 hypothetical protein contains Pfam prof... 27 9.5
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 27 9.5
At3g23980.1 68416.m03012 dentin sialophosphoprotein-related cont... 27 9.5
At1g64660.1 68414.m07330 Cys/Met metabolism pyridoxal-phosphate-... 27 9.5
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 27 9.5
At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing pro... 27 9.5
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 111 KDGKNSVDNIIKWMKDS-KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQ 287
K K + ++ W K K+ DE+ A +EK + L++ + I + KE+ K EQ
Sbjct: 492 KKEKKCLKKLVAWEKQILKLQDEITAEKEKIKALYKTLAQITEYE----KEIEAKWRQEQ 547
Query: 288 KKNVEELTTMLEKQPPK 338
K E L M E+Q K
Sbjct: 548 KAKEEALAQMEEEQRSK 564
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 36.7 bits (81), Expect = 0.009
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 3/101 (2%)
Frame = +3
Query: 99 EKLQKDGKNSVDNIIKW---MKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVIN 269
+K+ + G NS D + +K+ + ++ E+ +KL + N D+N L +
Sbjct: 1116 KKINESGNNSTDEQEEGKYILKEESLTEDASIDNERVKKLAD-----ENKDLNDLVSSLE 1170
Query: 270 KMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEK 392
K E +K EE + + E++ + LDA + G K ++++
Sbjct: 1171 KKIDETEKKYEEASRLCEERLKQALDA-ETGLIDLKTSMQR 1210
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 30.7 bits (66), Expect = 0.58
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Frame = +3
Query: 162 KIIDEVKASE-EKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQ 329
K++++V + E+ +L E + + +I KLK+ I M+ + K +EL + LEKQ
Sbjct: 199 KLLEDVSPMKFERMNRLVE----VKDEEITKLKDEIRLMSGQWKHKTKELESQLEKQ 251
>At2g32235.1 68415.m03939 expressed protein
Length = 310
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 84 MDQFFEKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGV 221
+DQ+ KL K G+ +K K +DEV EE+ ++ EGV
Sbjct: 230 LDQWCNKLLKYGEAVSSGSVKQDDSPKAVDEVVQQEEQPKECKEGV 275
>At3g58840.1 68416.m06558 expressed protein
Length = 318
Score = 29.5 bits (63), Expect = 1.3
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Frame = +3
Query: 99 EKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKL-----FEGVPDINNIDINKLKEV 263
E L+KD + V+ ++ ++ + EV+ EEK++KL + D +I +L++
Sbjct: 145 EGLRKD-RAEVEKRVRDLERKIGVLEVREMEEKSKKLRSEEEMREIDDEKKREIEELQKT 203
Query: 264 INKMAAEQKKNVEELTTMLEKQ 329
+ + E KNVEEL K+
Sbjct: 204 VIVLNLELVKNVEELKKWKSKK 225
>At3g27330.1 68416.m03418 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles: PF00097 zinc
finger, C3HC4 type (RING finger), PF01697 Domain of
unknown function
Length = 913
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 334 GGCFSSMVVNSSTFFFCSAAILLITSFNLFMSILLISG 221
GGC +VV+ TFF+ IL + SF LF ++ + G
Sbjct: 9 GGCGGDVVVSWRTFFW--FVILFVFSFVLFSTMFIFKG 44
>At5g03780.1 68418.m00343 expressed protein
Length = 420
Score = 28.7 bits (61), Expect = 2.4
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +3
Query: 108 QKDGKNSVDNIIKW-MKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAE 284
+KDG +S + + + K+IDEV ASE+ A + F+ D + ++ ++N A
Sbjct: 189 EKDGCSSKPDADQGKVGTGKVIDEVGASEKVATEKFQDAED-DETAKDQGTRILN-TGAG 246
Query: 285 QKKNVEELTTMLEKQPPKVLDALQ 356
+K+ V +M E K D +Q
Sbjct: 247 KKREVSSFLSMQESFSAKEQDQVQ 270
>At5g26770.2 68418.m03191 expressed protein
Length = 335
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 162 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQ 329
K+++EV + + V D +I KLK+ + M+A K +EL + LE+Q
Sbjct: 198 KLLEEVSPKNFERMNMLLAVKDE---EIAKLKDDVKLMSAHWKLKTKELESQLERQ 250
>At5g26770.1 68418.m03190 expressed protein
Length = 335
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 162 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQ 329
K+++EV + + V D +I KLK+ + M+A K +EL + LE+Q
Sbjct: 198 KLLEEVSPKNFERMNMLLAVKDE---EIAKLKDDVKLMSAHWKLKTKELESQLERQ 250
>At3g14690.1 68416.m01858 cytochrome P450, putative similar to
GB:Q05047 from [Catharanthus roseus]
Length = 512
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 210 FEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEK 326
F +P I +D ++KEV NK+ QK + L T++ K
Sbjct: 100 FGPIPTITIMDPEQIKEVFNKVYDFQKPHTFPLATIIAK 138
>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
family protein similar to Potential
phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
InterPro accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 1243
Score = 28.3 bits (60), Expect = 3.1
Identities = 27/102 (26%), Positives = 50/102 (49%)
Frame = +3
Query: 96 FEKLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKM 275
FE+L K+GKN ++ K + ++ RKL E I N + +K K +
Sbjct: 650 FERLSKNGKNYLEATSKHLNGYGEAG-LRTLALSYRKLDETEYSIWNSEFHKAK---TSV 705
Query: 276 AAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEKK*P 401
A++ + +E+++ M+EK + + GA+A + L+K P
Sbjct: 706 GADRDEMLEKVSDMMEK------ELILVGATAVEDKLQKGVP 741
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +3
Query: 168 IDEVKASEEKARKLFEG-VPDINNIDINKLKEV--INKMAAEQKKNVEEL 308
+ E+K +E K F + ++ + K KE+ +NK++AEQK +++EL
Sbjct: 281 LQEIKQIKESTAKSFHNELIELRDQLDTKQKELAQVNKLSAEQKNSIDEL 330
>At1g79640.1 68414.m09286 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 694
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +3
Query: 144 KWMKDSKIIDEVKASEEKARKLFEGVPD-INNIDINKLKEVINKMAAEQK 290
K +K S + ++S+ ARKL +G+PD +N + K KE M A++K
Sbjct: 267 KLLKHS-FFKQARSSDYIARKLLDGLPDLVNRVQAIKRKE--EDMLAQEK 313
>At1g13330.1 68414.m01547 expressed protein similar to nuclear
receptor coactivator GT198 (GI:16506273) {Rattus
norvegicus}; similar to TBP-1 interacting protein
(GI:7328534) [Homo sapiens]
Length = 226
Score = 28.3 bits (60), Expect = 3.1
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +3
Query: 153 KDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEV----INKMAAEQKKNVEELTTML 320
KD+K+ EVK EEK KL EG+ + D ++++ IN+ ++ + T+
Sbjct: 124 KDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWDTVT 183
Query: 321 EKQPPKV 341
E P V
Sbjct: 184 ENSPKDV 190
>At4g21170.1 68417.m03062 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 534
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 192 EKARKLFEGVPDIN-NIDINKLKEVINKMAAEQKKNVEELTTMLE 323
EKA L E + + ++D+N V++++ QK+ VEE + E
Sbjct: 434 EKALVLHEKIKKMKGSLDVNAYNAVLDRLMMRQKEMVEEAVVVFE 478
>At3g16730.1 68416.m02136 expressed protein ; expression supported
by MPSS
Length = 695
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 135 NIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKE-VINKMAAEQKKNVEELT 311
NI K K + + V ++K + E DI + + +INK+ E+ NVE T
Sbjct: 489 NIAKSEKQTDLAARVSTWKQKIEQNLEEQELHPPFDIQEYGDRIINKLTVEESGNVETFT 548
Query: 312 TMLEKQ 329
+++ Q
Sbjct: 549 DLMKDQ 554
>At5g16790.1 68418.m01966 expressed protein
Length = 233
Score = 27.5 bits (58), Expect = 5.4
Identities = 15/63 (23%), Positives = 37/63 (58%)
Frame = +3
Query: 150 MKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLEKQ 329
+++ + +E+K +E R++ + DI ++ +L+E +K+ +QK+ E + ++ Q
Sbjct: 101 LREKENFNELK--DETNRQIMQAQADIEDLK-KQLEE--SKIERQQKEECEAIRKLISAQ 155
Query: 330 PPK 338
PP+
Sbjct: 156 PPR 158
>At1g79200.1 68414.m09234 expressed protein
Length = 159
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 108 QKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNID-INKLKEVINKMAAE 284
+KD K+ + K SK K E KL EG+P+++ D +K E + E
Sbjct: 48 KKDKKSHKHHKSSTSKKSKDDKPKKKHTESDHKLKEGIPELSMEDYFSKNNEFATWLKEE 107
Query: 285 QKKNVEELTT 314
++ +LTT
Sbjct: 108 KRTYFNDLTT 117
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 27.5 bits (58), Expect = 5.4
Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 171 DEVKASEEKARKLFEGVPDIN------NIDINKLKEVINKMAAEQKKNVEELTTMLEKQP 332
DEVK+ EEK KL + + D++ N DI KEV+ K + K EE T EK
Sbjct: 49 DEVKSYEEKVTKLEDQIKDLDLKLSTANADI-VAKEVLVK---QHSKVAEEAVTGWEK-- 102
Query: 333 PKVLDALQAGASAFKAALE 389
+A ASA K LE
Sbjct: 103 ------AEAEASALKTHLE 115
>At4g01840.1 68417.m00241 outward rectifying potassium channel,
putative (KCO5) identical to KCO5 protein [Arabidopsis
thaliana] gi|6522947|emb|CAB62162; similar to kco1
[Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
family, PMID:11500563
Length = 408
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -1
Query: 296 VFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGSFHFIYYFRIFHPFDNVVD 129
VF+LFG F+D L + Y++D++ + L+ + H ++ F D ++D
Sbjct: 182 VFVLFGFGFLDILLSGVVNYVLDLQESM-ILTGIQTRQHHQHHHHHRFSAKDYIID 236
>At2g47760.1 68415.m05962 ALG3 family protein contains Pfam profile:
PF05208 ALG3 protein
Length = 438
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 314 GGQLFNVFLLFGGHFVDNLFQFIYVYIVDIRNAFEQLSRLLLGS-FHFIYYFRIFH 150
GG+++ +LFG ++ NL + +Y+ + LS L L H I+ R+F+
Sbjct: 106 GGEVYPAQILFGVLYIVNLGIVLIIYVKTDVVPWWALSLLCLSKRIHSIFVLRLFN 161
>At1g28000.1 68414.m03429 hypothetical protein
Length = 349
Score = 27.1 bits (57), Expect = 7.2
Identities = 9/42 (21%), Positives = 23/42 (54%)
Frame = +3
Query: 120 KNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDI 245
KN +D I++ MK++ + + + K + +PD+ +++
Sbjct: 147 KNMIDEILRQMKENGVEHDKNLTANNVLKAYASLPDVEAMEM 188
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 162 KIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKM---AAEQKKNVEELTTMLEK 326
K ++E+K +++ ++ I K VI K+ AAE+K N+E L + LEK
Sbjct: 179 KELEELKLEKQQKEMFYQTERCGTASLIEKKDAVITKLEASAAERKLNIENLNSQLEK 236
>At5g27160.1 68418.m03241 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 702
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +3
Query: 177 VKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTML 320
V A + A+K+F+ V I +D+ K + + K ++K + ++L +L
Sbjct: 219 VDADLKFAKKIFKKVSGIKIVDVEKKLDELKKCGEKKKTDRKKLAILL 266
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 237 IDINKLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQ 356
+D +E + E K+N+E L L K+ LDA++
Sbjct: 136 LDAKTKEEELRATITEMKENIESLQEKLSKEKLSKLDAIE 175
>At3g23980.1 68416.m03012 dentin sialophosphoprotein-related
contains weak similarity to Dentin sialophosphoprotein
precursor (Swiss-Prot:Q9NZW4) [Homo sapiens]
Length = 736
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 249 KLKEVINKMAAEQKKNVEELTTMLEKQPPKVLDALQAGASAFKAALEK 392
KL++ + AAE+ K + T ++ V+D+ AGAS L++
Sbjct: 19 KLEQFRKRKAAEKAKKASQNTQPVDNSQQSVIDSDGAGASISNGPLKQ 66
>At1g64660.1 68414.m07330 Cys/Met metabolism
pyridoxal-phosphate-dependent enzyme family protein
similar to SP|P13254 Methionine gamma-lyase (EC
4.4.1.11) (L-methioninase) {Pseudomonas putida};
contains Pfam profile PF01053: Cys/Met metabolism
PLP-dependent enzyme
Length = 441
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Frame = -1
Query: 368 TSSGLQCVQNLRRLLLEHGGQLFNVFLLFGG------HFVDNLFQFIYVYIVDIRNAFEQ 207
TSSG+ + ++ L GG + L+GG HF+ I VDI +
Sbjct: 122 TSSGMSAISSVMLQLCSSGGHVVAASTLYGGTHALLSHFLPRTCN-ITTSFVDITDHGAV 180
Query: 206 LSRLLLGSFHFIYYFRIFHPFDNVVD 129
+ ++ G +Y+ + +P V D
Sbjct: 181 ANAIVEGRTQVLYFESVANPTLTVAD 206
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 150 MKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAAEQKKNVEELTTMLE 323
MK K DE+ +E+ K EG + KLKE + + E+++ + +L +E
Sbjct: 472 MKKEK--DEMAKEKEEVEKKLEGQVREEEKEKEKLKETLLGLGEEKREAIRQLCIWIE 527
>At1g54440.1 68414.m06210 3'-5' exonuclease domain-containing
protein / helicase and RNase D C-terminal
domain-containing protein / HRDC domain-containing
protein similar to SP|Q01780 Polymyositis/scleroderma
autoantigen 2 {Homo sapiens}; contains Pfam profiles
PF00570: HRDC domain, PF01612: 3'-5' exonuclease
Length = 738
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +3
Query: 102 KLQKDGKNSVDNIIKWMKDSKIIDEVKASEEKARKLFEGVPDINNIDINKLKEVINKMAA 281
K Q G + + K+ D+K+ +EVK S+ K K+ V D ++ D ++ E K AA
Sbjct: 615 KKQSSGFGVLLSKRKFESDNKVKEEVKVSKSKPDKVIIVVDDDDDDDDDESYEQSTK-AA 673
Query: 282 EQKKNVEE 305
+ V E
Sbjct: 674 DALDRVSE 681
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,435
Number of Sequences: 28952
Number of extensions: 147232
Number of successful extensions: 552
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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