Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c18
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 30 1.1
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 29 2.6
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 29 3.4
AC024817-37|AAF59579.1| 107|Caenorhabditis elegans Hypothetical... 29 3.4
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 28 4.5
AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical ... 28 4.5
Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich ... 28 6.0
L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeo... 27 7.9
AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene... 27 7.9
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 114 TDTDDISDRESEYEERSPEDSP--KVTKKSLSTVGFRSSPENLNNKPMALRA 263
T+ DD SDR EER P P ++SL+ + E N P+++RA
Sbjct: 436 TNNDDDSDRSESPEERVPTPMPDEDPREQSLARAYYEQMLEMPNRVPLSMRA 487
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +3
Query: 78 EVYY*SISNVMYTDTDDISDR----ESEYEERSPEDSPKVTKKSLSTVGFRSSPENLN 239
EVYY ++ DTD+++ + +SE E PE PK+T + +V ++ PE N
Sbjct: 311 EVYYKNLK----IDTDNLNKKRIAAKSEIETTRPETKPKITPMKVISVTPQNLPEEPN 364
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +3
Query: 132 SDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLNNKPMALRATQSFTGAIEELKANFQ 311
SD+ S ++ER D+ K+ +++ + V PE L + A+ A Q GA + LK+ +
Sbjct: 158 SDKSSTFDERIRLDAVKIDEEAFAVV--EEEPEKLETQEQAIAAIQ---GAKQLLKSPTK 212
Query: 312 IN 317
++
Sbjct: 213 VS 214
>AC024817-37|AAF59579.1| 107|Caenorhabditis elegans Hypothetical
protein Y54G2A.19 protein.
Length = 107
Score = 28.7 bits (61), Expect = 3.4
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +2
Query: 326 PSNSHKSHHCMPLRMSTKALRQRTFSDQRKKYFSSSRGFPRGPKLSRLQFRAQSNRY 496
PS H S L + T L ++ QR + S +RG P + S AQS+ Y
Sbjct: 14 PSPGHPSTGRPDLDLITDPLEEQRLEPQRDSHRSDTRGHPSTGRKSHNSTSAQSSVY 70
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 117 DTDDISDRESEYEERSPEDSPKVTKKSLS 203
D+DD + + E EE S +D+P+V KKS++
Sbjct: 259 DSDDDEEDDDEEEEESDDDAPQV-KKSVA 286
>AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical
protein C50A2.2 protein.
Length = 557
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 117 DTDDISDRESEYEERSPEDSPKVTKKSLSTVGFRSSPENLN-NKP 248
++DD D E + + SPE++P KS + GF + ENL N P
Sbjct: 208 ESDD--DLEPDVAQDSPENTPAPPTKSPESSGFSENLENLGANTP 250
>Z73971-1|CAA98249.2| 929|Caenorhabditis elegans Hypothetical
protein C50H2.1 protein.
Length = 929
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 427 LFTWFPPRS*TITATVSSPIKSLCSGKKIAGNFF 528
L WFP TAT+ P+ SL S K + FF
Sbjct: 647 LICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFF 680
>AF224743-1|AAF82248.1| 929|Caenorhabditis elegans leucine-rich
repeat-containingG protein-coupled receptor protein.
Length = 929
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 427 LFTWFPPRS*TITATVSSPIKSLCSGKKIAGNFF 528
L WFP TAT+ P+ SL S K + FF
Sbjct: 647 LICWFPTLFFGFTATIGFPLLSLSSAKFVLVFFF 680
>L14730-2|AAB37562.2| 187|Caenorhabditis elegans C.elegans homeobox
protein 16 protein.
Length = 187
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 449 GPKLSRLQFRAQSNRYVLEKRLQEISLE 532
G +L RL+ + +RY+ EKR QE++ E
Sbjct: 96 GDQLDRLKTEFRESRYLTEKRRQELAHE 123
>AY647457-1|AAT67384.1| 187|Caenorhabditis elegans homeobox gene 16
protein.
Length = 187
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 449 GPKLSRLQFRAQSNRYVLEKRLQEISLE 532
G +L RL+ + +RY+ EKR QE++ E
Sbjct: 96 GDQLDRLKTEFRESRYLTEKRRQELAHE 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,619,809
Number of Sequences: 27780
Number of extensions: 285974
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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