Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c16
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    31   0.19 
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    29   0.77 
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    28   1.0  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    27   3.1  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    26   4.1  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    26   4.1  
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi...    26   4.1  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    26   5.4  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    25   7.2  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.2  
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    25   7.2  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 297 IQDYPEIMEAHHENCKYVKWNLENVAKMLRNNFPTKHILIVRPSRIEYKSF 449
           I+D   I+    E C+    N ++  + L N  PTKH    + SR    SF
Sbjct: 501 IEDKLGILSLLDEECRLPSGNHQSFLQKLNNQLPTKHSQFYKKSRFNDGSF 551


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 381 LRNNFPTKHILIVRPSRIEYKSFSCYDNFVPSNNAGVPEHTPTHNALQHLERLIKSV-GE 557
           +++NF       +R S+I+    S    F PSNN       P +++L    ++ +S+ G+
Sbjct: 47  VKHNFEEAAQAFLRESKIQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESISGD 106

Query: 558 RL 563
           RL
Sbjct: 107 RL 108


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 521 PTPGTINKIGWRTFERCVESSSSFAPR 601
           P+PGT N +G+ TF+        F PR
Sbjct: 225 PSPGTANLLGFHTFDSQFPDQYRFTPR 251


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 459 DNFVPSNNAGVPEHTPTHNALQHL 530
           +NFVPS N    E  P+  ALQHL
Sbjct: 315 NNFVPSKNQVGLEPLPSLEALQHL 338


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +2

Query: 218 SRERHPVPPGNGARCTPA---TFGLFR 289
           S  +HPV P  G  C+PA   TF  FR
Sbjct: 212 SPSQHPVNPPTGPACSPAYNNTFDAFR 238


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 536 INKIGWRTFERCVESSSSFAP 598
           +N++ W  F+ C+    SF+P
Sbjct: 523 LNRVTWELFDICIAEKKSFSP 543


>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
           Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 192 LRRVFGFKGRVNDTLFHPATVRVAPQQLLVYFGGDIQDYPEIMEAHHENCKYVK 353
           + ++ G   + +  +FHP       ++ + + G +  +  E+    HEN KY+K
Sbjct: 39  IAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKEC-NLTEVFNTTHENVKYLK 91


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 277 KSCWGATRTV-AGWNRVSFTRPLNPKTRRNRSGDCSSLVTLATLCSIIVKGRCPAVN 110
           +S W  TR + AG ++ SFT   N    R   G  S     +T  ++ +KG   +++
Sbjct: 281 ESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSIS 337


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 60  SQIS*INKCHETNYNEKLTAGHRPLTMMEQRV 155
           +Q+S ++KCHE +  EK    +  +  +EQ V
Sbjct: 458 TQLSELSKCHEASLAEKQLTYNLAMEALEQTV 489


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 354 WNLENVAKMLRNNFPTKHILIVRPSRIEYKSFSCYDNFVPSN 479
           W L +VA +  + F TK + IVRP  +   +      F+P N
Sbjct: 251 WILLSVAHVFLDAFTTKILRIVRPILLFPLAGKFLGRFIPGN 292


>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/40 (25%), Positives = 23/40 (57%)
 Frame = +3

Query: 267 QQLLVYFGGDIQDYPEIMEAHHENCKYVKWNLENVAKMLR 386
           Q L +  GG   DY   +  +H +C++ K++ + +A+ ++
Sbjct: 245 QLLGILSGGMTDDYVSWVAENHAHCQHQKFDEDAIARKMK 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,148
Number of Sequences: 5004
Number of extensions: 50668
Number of successful extensions: 161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)