Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c16
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0753 - 24177863-24178021,24178425-24178730,24181204-241814...    30   1.4  
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59...    28   5.6  
08_02_0042 - 11542707-11542730,11542936-11543011,11543316-115434...    28   7.4  
01_01_1076 - 8474869-8474934,8475028-8475128,8475248-8475405,847...    28   7.4  
09_02_0201 + 5728377-5728584,5729044-5729153,5729231-5729286,572...    27   9.8  
02_04_0398 - 22598895-22599100,22599865-22599943                       27   9.8  

>06_03_0753 -
           24177863-24178021,24178425-24178730,24181204-24181475,
           24181663-24181696,24181937-24182014,24182373-24182516,
           24183064-24183122,24183593-24183723,24186655-24186743
          Length = 423

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 267 QQLLVYFGGDIQDYPEIMEAHHENCKYVKWNLENVAKMLRNNFPT 401
           Q LL+YF G  QD P   E  H+   +VK  L        +  PT
Sbjct: 45  QALLLYFDGQEQDKPSTQEEPHKPLNFVKETLNIFPSQPMDGEPT 89


>01_01_0078 +
           587975-588179,588506-588606,589087-589167,589240-590178,
           590388-590542,590837-590902,590963-591023,591659-591853,
           591939-592049,592116-592280
          Length = 692

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
 Frame = +3

Query: 174 EQSPLRLRRV--FGFKGRVNDTLFHPATVRVAPQQLLVYFGGDIQD 305
           E+S + LR V  FG +GR  D +  PA+ +V   + +++ G DI+D
Sbjct: 60  EESSIGLRNVRSFGTEGRKKDGVQIPASTKV--YEYILFRGSDIKD 103


>08_02_0042 -
           11542707-11542730,11542936-11543011,11543316-11543425,
           11544562-11544747,11545421-11547697
          Length = 890

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +3

Query: 396 PTKHILIVRPSRIEYKSFSCYDNFVPSNNAGVPEHTPTHNALQHLERLIKSVG 554
           P  H+L++ P R  + S S           G     P+ ++ +HL+ L++ +G
Sbjct: 4   PPPHLLLLLPRRRRHASSSSAAAAAAGELVGALSALPSPDSARHLDALLRRIG 56


>01_01_1076 -
           8474869-8474934,8475028-8475128,8475248-8475405,
           8475554-8475628,8476528-8476667,8477284-8477377,
           8478063-8478271
          Length = 280

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
 Frame = +3

Query: 477 NNAGVPEHTPT-----HNALQHLERLIKSVGERLK 566
           N  G P+ TP      H   QH+ +L+K   E+LK
Sbjct: 55  NTLGTPKDTPDLRERIHKTRQHITQLVKDTSEKLK 89


>09_02_0201 +
           5728377-5728584,5729044-5729153,5729231-5729286,
           5729396-5729480,5729550-5729597,5729723-5729797,
           5729893-5730004,5730371-5730536,5730579-5730630,
           5730729-5730786,5731029-5731127,5731219-5731349
          Length = 399

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +3

Query: 300 QDYPEIMEAHHENCKYVKWNLENVAKMLRNNFPTKHILI 416
           +D P+ ++A+        W ++ VA+ ++N+F T  IL+
Sbjct: 148 EDVPDDVKANKRYAGSSNWTVKEVAETVKNDFGTIDILV 186


>02_04_0398 - 22598895-22599100,22599865-22599943
          Length = 94

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 531 PGVGGRCEWGC 499
           PG GG C WGC
Sbjct: 70  PGPGGHCRWGC 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,582
Number of Sequences: 37544
Number of extensions: 348536
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)