Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c16
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical ...    29   2.9  
AC024805-11|AAK39334.1|  141|Caenorhabditis elegans Hypothetical...    29   3.8  
Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical pr...    28   5.0  
U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    28   5.0  
U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    28   6.6  
Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    27   8.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    27   8.7  

>U80454-5|AAB37877.1|  368|Caenorhabditis elegans Hypothetical
           protein T16A1.8 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 451 LKLLYSILDGLTMSMCFVGKLFLSILATFSRFHFT 347
           L+L  S L      MC +  LFLS+L+T ++ H T
Sbjct: 9   LRLPQSALKNALRQMCLMEHLFLSVLSTKAKQHIT 43


>AF016667-1|AAB66088.2|  162|Caenorhabditis elegans Hypothetical
           protein T20H12.1 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 141 SSLRDDVQQSIFHCNLFHGIYLFMKSDYYEIF 46
           SS R DVQ  IF C LF+ ++    S +++ F
Sbjct: 45  SSQRLDVQSQIFCCYLFNRVFFLEISPFFKFF 76


>AC024805-11|AAK39334.1|  141|Caenorhabditis elegans Hypothetical
           protein Y51H7C.3 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
 Frame = +3

Query: 363 ENVAKMLRNNFPTKHILIVRPSRIEYKSFSCYDNFVPSNNAGV------PEHTPTHNALQ 524
           E V K LRN  P +H+  V  S  +  SF+   + V  +  G+      P+ T   +  Q
Sbjct: 48  EKVIKELRNGLPVRHVSTVSVSSTD-MSFNTDSSNVTDHYCGLPIDSSTPKETSKRDFQQ 106

Query: 525 HLERLIKSVGERLK 566
             E+  +  GER K
Sbjct: 107 KHEQYAEEEGERAK 120


>Z82077-8|CAB63329.1|  459|Caenorhabditis elegans Hypothetical
           protein W09C5.2 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 354 WNLENVAKMLRNNFPTKHILIVRPSRIEYKSFS---CYDNFVPSNNAGVPEHTPTHNALQ 524
           W    V  M  N+F T   +I+R + I+    +    Y+NF      G+P++    +   
Sbjct: 270 WGTVEVENMQHNDFLTLRDMIIRTNLIDMIDVTRNVHYENFRFRQMEGLPKNEKNRDPFT 329

Query: 525 HLE 533
           HLE
Sbjct: 330 HLE 332


>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 267 QQLLVYFGGDIQDYPEIMEAHHENCKYVKWNLENVAKMLRNNFPTKHIL-IVRP---SRI 434
           Q +  Y   DIQ + +IM AH ++     +  E+  +++ NN  T+ +L ++RP    RI
Sbjct: 313 QMVQAYQDNDIQAFEQIMAAHQDSIMADPFIREHTEELM-NNIRTQVLLRLIRPYTNVRI 371

Query: 435 EYKS 446
            Y S
Sbjct: 372 SYLS 375


>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 456 YDNFVPSNNAGVPEHTPTHNALQHLERLIKSVGERLKDV 572
           +D F   N+   P HT   N+   + RLI S+     DV
Sbjct: 608 FDIFARDNDGSTPLHTACKNSASRIARLIISIDSSAIDV 646


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 456 YDNFVPSNNAGVPEHTPTHNALQHLERLIKSVGERLKDV 572
           +D F   N+   P HT   N+   + RLI S+     DV
Sbjct: 608 FDIFARDNDGSTPLHTACKNSASRIARLIISIDSSAIDV 646


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 116 SQFFIVICFMAFIYL*NL--TIMKYLCLFMYKVCIIDMR 6
           +++   I F  F  L N+  TI  Y+ LF Y+ C++ +R
Sbjct: 84  AKYIFFISFQVFAVLPNMSETIYSYVSLFAYEFCLLLLR 122


>Z73974-2|CAA98271.2|  713|Caenorhabditis elegans Hypothetical
           protein F29F11.4 protein.
          Length = 713

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 211 NPKTRRNRSGDCSSLVTLATL 149
           NPK R  R G CSS  T++TL
Sbjct: 530 NPKGRHARIGSCSSQSTMSTL 550


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 51  FHNSQIS*INKCHETNYNEKLTAGHRP 131
           FH +  S IN+C E  Y ++L A HRP
Sbjct: 332 FHRT-CSDINECAEFGYCDQLCANHRP 357


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 51  FHNSQIS*INKCHETNYNEKLTAGHRP 131
           FH +  S IN+C E  Y ++L A HRP
Sbjct: 332 FHRT-CSDINECAEFGYCDQLCANHRP 357


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,393,937
Number of Sequences: 27780
Number of extensions: 294077
Number of successful extensions: 859
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)