Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c16
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   4.5  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   4.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 HNALQHLERLIKSVGERL 563
           HN +Q++ ++IKS  E++
Sbjct: 56  HNHIQNIFKIIKSTNEKI 73


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 HNALQHLERLIKSVGERL 563
           HN +Q++ ++IKS  E++
Sbjct: 39  HNHIQNIFKIIKSTNEKI 56


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 243 PATVRVAPQQLLVYFGGDIQDYPEIMEAHHENCKYVKW 356
           P  V V P  L V+ GG+ +   E+         ++ W
Sbjct: 330 PLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +3

Query: 243 PATVRVAPQQLLVYFGGDIQDYPEIMEAHHENCKYVKW 356
           P  V V P  L V+ GG+ +   E+         ++ W
Sbjct: 330 PLHVEVTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITW 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,090
Number of Sequences: 438
Number of extensions: 3761
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)