Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c12
(682 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 31 0.64
08_01_0724 - 6426263-6426514,6428511-6428742,6429081-6429400,643... 29 2.6
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 29 4.5
11_01_0086 + 646609-647791,648838-649115,650502-650735 29 4.5
05_01_0214 - 1615519-1616775 28 6.0
09_02_0289 - 6941154-6941399,6941630-6941722,6941801-6941884,694... 28 7.9
07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601 28 7.9
03_01_0256 - 1992298-1993878 28 7.9
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
Frame = +1
Query: 298 CMLITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLR--DVYHVMEAL 471
C Y + V + K L ++ F + ++S + AF R +V HV++
Sbjct: 917 CFTFVYLLSYVHISGAKRTLGFLLCIFFGLALALVSSGILPAFTEDIARSVNVVHVVDTT 976
Query: 472 FNCCGTTGPSSYDGILSQLPPSCCASPVD 558
G T PSSY + S P VD
Sbjct: 977 TVNSGNTEPSSYVTLFSNTPGKLTKELVD 1005
>08_01_0724 -
6426263-6426514,6428511-6428742,6429081-6429400,
6433071-6433163,6433188-6433354,6433432-6433846
Length = 492
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 639 DGPTEGIEVINQSSGAAGERVGGIEGVV 556
DG EGI+ Q +G A + GG EG+V
Sbjct: 438 DGTVEGIQEEGQGAGEAEQDAGGEEGIV 465
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 675 ELKKYDNDQNAA---DGPTEGIEVINQSSGAAGERVGGIEGVV 556
EL+ DQ A DG EGI+ Q +G A + GG EG++
Sbjct: 338 ELEGKTADQTADEQDDGTAEGIQEEGQGAGEAKQDAGGKEGIM 380
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/67 (22%), Positives = 25/67 (37%)
Frame = +3
Query: 276 WSDKGIKMYADNLLHIHGDTGGREDLPGYRGIRFSVRRHQHNNQLGDHSVQHEQLKRRIS 455
W+++G M L +HG G G+R S R + G ++ +
Sbjct: 558 WNNRGDSMTVVKYLDMHGSPKNDLGEKGQTGVRMSCRVKNRTHHSGSLVTPEGNIEEMLK 617
Query: 456 RHGSSIQ 476
H +IQ
Sbjct: 618 EHDRNIQ 624
>11_01_0086 + 646609-647791,648838-649115,650502-650735
Length = 564
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = -1
Query: 637 WPYRRYRSNQSVEWCSRGTRWGHRRCCQRG 548
W YR + + W + HRRCC RG
Sbjct: 318 WFYRAFATMARSAWALQVAVTAHRRCCGRG 347
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -2
Query: 417 GHPAGYCAGDVGQKTEYHDSQVDLHGHQYHHEYGVG 310
GH + G ++H + HGH +HHE G G
Sbjct: 193 GHGHSHDHDHGGSDHDHHHHEDQEHGHVHHHEDGHG 228
>09_02_0289 -
6941154-6941399,6941630-6941722,6941801-6941884,
6947011-6947146,6947310-6947455,6947826-6948051,
6948595-6948677,6949004-6949198,6949276-6949374,
6949762-6949875,6949949-6950036,6950353-6950558,
6950850-6950902,6951074-6951377,6952195-6952283,
6952675-6953052,6953665-6953726,6954124-6954189,
6955126-6955205
Length = 915
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 251 NMMHPRTIIPIGKALTGRIS*RSRRFLKTATPRRIIAR-PANEKTRL 114
N++HPRTIIP+ K I R + P I + PANE L
Sbjct: 350 NVLHPRTIIPVMK---DNIPIVIRNMFNLSAPGTTICKQPANENADL 393
>07_01_0889 + 7426680-7427396,7428073-7428222,7429296-7429601
Length = 390
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 438 AARVERCGHPAGYCAGDVGQKTEYHDSQVDLHGHQYH-HEYG 316
AA + H + GD G E H+ QV +H H H H +G
Sbjct: 174 AATQQHNHHHNHHVVGDGGGGGEEHEGQVHVHTHATHGHAHG 215
>03_01_0256 - 1992298-1993878
Length = 526
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 376 FLSDVTSTITSWVTTAFNTSSLRDVYHVMEA--LFNCCGT 489
F D+ S I W+ A S+L ++YH+ A L CGT
Sbjct: 320 FQKDIFSAI-GWIPEAKTMSALDELYHIARAQTLIALCGT 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,399,386
Number of Sequences: 37544
Number of extensions: 398857
Number of successful extensions: 1199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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