Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c12
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    80   2e-17
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.2  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 63/212 (29%), Positives = 92/212 (43%), Gaps = 9/212 (4%)
 Frame = +1

Query: 70  MCCPEFIAKYVFFIANLVFSLAGLAIIRLGVAV-LRNLRDLQDILPVNALPXXXXXXXXX 246
           M C   + KY+ FI N VF++ GL I+ LGV + L+ L   + I    A P         
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 247 XXXXXXXXXXXXX-KESRCMLITYSIFMVILVAVKIYLAIVVFGFL--SDVTSTITSWVT 417
                         +ES CM IT++ F++ ++ V+I +A+  F  +   D    I+    
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQ 120

Query: 418 TAFN----TSSLRDVYHVMEALFNCCGTTGPSSYDGILSQLPPSCCASPVDNTFYAPNAF 585
             FN     S  +D    ++    CCG    S Y+     +P SCC SP +NT    N++
Sbjct: 121 EIFNGYFLNSESKDFIDFIQKNLQCCGVHSLSDYND--KPIPASCCNSPENNTCSISNSY 178

Query: 586 P-GCTTRLIDYFDTFGRAIGSVLIIIIFLEFI 678
             GC   L D     G   GSV I I  +E I
Sbjct: 179 TNGCVEALKDTVKLAGTVFGSVAIAIAIVELI 210


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 357  GYRGIRFSVRRHQHNNQLGDHSVQHEQLKRRISRHGSSIQ 476
            G +G    +++   +NQ     +Q +QLKR ++    SIQ
Sbjct: 1041 GLQGQTIFIKQSPSSNQ--SQQIQQQQLKRVVTNQQQSIQ 1078


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 573 PQRVPRLHHSTD 608
           PQ +PR+HH  +
Sbjct: 507 PQHLPRIHHDAE 518


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 573 PQRVPRLHHSTD 608
           PQ +PR+HH  +
Sbjct: 422 PQHLPRIHHDAE 433


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 573 PQRVPRLHHSTD 608
           PQ +PR+HH  +
Sbjct: 741 PQHLPRIHHDAE 752


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 399 CAGDVGQKTEYH 364
           C+G+V   TEYH
Sbjct: 500 CSGEVASLTEYH 511



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 426 QHEQLKRRISRHGSSIQLLWNNRPLFVRRYLVTAA 530
           Q +Q +++  +  SS  L+  N P    RYL  AA
Sbjct: 800 QQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAA 834


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = -2

Query: 222 YWQSVDW 202
           YWQ VDW
Sbjct: 573 YWQGVDW 579


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 420  SVQHEQLKRRISRHGSSIQLLWNNRPL 500
            +V  ++ KRR+ ++G  + +   N PL
Sbjct: 1084 TVSQQKQKRRMVKYGKLVMIHEENAPL 1110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,449
Number of Sequences: 438
Number of extensions: 4124
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)