Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c10
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   3.7  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    25   4.8  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   6.4  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   8.4  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 415  DKIQIFTVNKKPYHVLKITLNKNEFIYLHTTINLYYKAYSKIY 287
            +KIQI T     +    +    N+F++L T +   Y  Y  +Y
Sbjct: 1595 NKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALY 1637


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 343 FIYLHTTINLYYKAYSKIYATMNYNM 266
           F+YLH    LYY +Y K   TM +N+
Sbjct: 92  FLYLHIGRGLYYGSY-KYPRTMTWNI 116


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 299 FQNLRNYELQHDNISLDCIYGQLNL 225
           FQ +RNY LQH  I +  I   L L
Sbjct: 741 FQKMRNYMLQHQAIRIHVIGDILKL 765


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 389 IYCKNLYFVRRYVCSVMSFYYKNI 460
           ++ K+L  +R Y  S+  +YY+N+
Sbjct: 291 VWQKSLESLRHYTASLNEYYYQNV 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,476
Number of Sequences: 5004
Number of extensions: 35729
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)