Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c09
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.7
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 3.0
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 5.3
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 5.3
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 25 7.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.0
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 25 7.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 9.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.3
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 1.7
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = -3
Query: 426 PKTLRILVSWDACKRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIA-----PASLNAAR 265
PK +IL+ + + + YGN + LSR D +SG + ++A PAS N A+
Sbjct: 2650 PKA-KILIGKELLRHGQEYGNSITNDLSRLCADVKSGKNESELQVALAPFCPASSNQAK 2707
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +3
Query: 333 AQNEIDIVNARFRNGDPVYKHPMIPGYEGFSG 428
+ E I A N D Y P IP Y GFSG
Sbjct: 329 SDKEFSIWTATECNNDCGYYLPGIPAYHGFSG 360
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 277 QRGW-CYPIERPMTSRSTVQHRTR 345
++GW CYP R RS + RTR
Sbjct: 144 EKGWLCYPCSRGAEDRSVPELRTR 167
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = -1
Query: 623 LGQHTDVLMVDLSGIYG*WRIRFDHIYRSPLSALP------SSVIRRKVAES*IS-ELFR 465
L Q+ +L + L +Y D R PLS P S+V K AE+ S + FR
Sbjct: 561 LSQYIYLLRIALVRLYTILMENNDSSQRKPLSVDPKQENVSSTVETAKQAETTASSDSFR 620
Query: 464 RLAETLKAVRHM 429
+ A TL +RH+
Sbjct: 621 KYANTLNDLRHL 632
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 165 PHYIPGYTGHCPEYKYRIGDTYGST 239
P YIPG+T ++ GD Y ST
Sbjct: 128 PKYIPGWTNPICIGRHAFGDQYKST 152
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 483 SALCDFSSNYRRRQST---EWAPVNVVKPDPPLSIN 581
+A+ + SS+ RRRQST + APV++ K +N
Sbjct: 591 NAMAELSSSMRRRQSTSVDDEAPVSLSKTSSSTRLN 626
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 446 KAVRHMTRKPFVSWYHGMLVNGIAITETCVHDV 348
K +R + P SW+ GML+ G + + V D+
Sbjct: 34 KKIRVFEKLPTFSWHEGMLIPGSNMQISFVKDL 66
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 333 LDGRSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRSD 211
LD + Y IA L + D+E SC++ S + R D
Sbjct: 152 LDDSLDVKKTIYTIAIKYLENSGIDKEASCLVLSRLFSRDD 192
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = -3
Query: 285 ASLNAARSDREGS-CVLSSHTYRRSDTCTRDNDPCTQEYNAVGRY*LNPEPL*ISKKKIF 109
+S + ++D G+ V +S T +D C+++N E R + P KK+
Sbjct: 1188 SSQSNRKADNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGVLSTPRSTRKKRKL 1247
Query: 108 GRIVM*LKHNLEFKKSKIS 52
GR N E S++S
Sbjct: 1248 GRKSQSSNVNKEVAISEVS 1266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,032
Number of Sequences: 5004
Number of extensions: 63517
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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