Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte24c09
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1175 - 34706870-34707616 29 2.4
10_08_0379 - 17373533-17374147 29 3.1
04_04_0509 - 25763685-25764293 28 5.5
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689... 28 7.2
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 7.2
01_01_0018 + 139150-140415 28 7.2
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 27 9.6
03_02_0098 + 5608787-5610812,5610956-5611053 27 9.6
>02_05_1175 - 34706870-34707616
Length = 248
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 625 SWGNIPTCLW*ISVGFMDNGGSGLTTFTGAHSVLCLLR*FDEKSQRAELVSFFDDSPKR* 446
+WG++ + + + +NGG+ GA +V LR E RA +S+ + KR
Sbjct: 152 AWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISY--EKKKRK 209
Query: 445 KP 440
KP
Sbjct: 210 KP 211
>10_08_0379 - 17373533-17374147
Length = 204
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 625 SWGNIPTCLW*ISVGFMDNGGSGLTTFTGAHSVLCLLR*FDEKSQRAELVSFFDDSPKR* 446
+WG++ + + + +NGG GA +V LR E RA VS+ + KR
Sbjct: 112 AWGSLDALVGRLRAAYEENGGRPENNPFGARAVRLYLREVREHQARARGVSY--EKKKRK 169
Query: 445 KP 440
KP
Sbjct: 170 KP 171
>04_04_0509 - 25763685-25764293
Length = 202
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = -2
Query: 625 SWGNIPTCLW*ISVGFMDNGGSGLTTFTGAHSVLCLLR*FDEKSQRAELVSFFDDSPKR* 446
+WG++ + + F +NGG + A +V LR E RA VS+ + KR
Sbjct: 113 AWGSLDALVGRLRAAFEENGGRPESNPFAARAVRLYLREVREHQARARGVSY--EKKKRK 170
Query: 445 KP 440
KP
Sbjct: 171 KP 172
>10_08_0607 +
19168164-19168358,19168594-19168716,19168791-19168946,
19169129-19169314,19169467-19169583,19169721-19169774,
19169854-19169925,19170430-19170535,19170658-19170754,
19171090-19171184,19172318-19172420,19172699-19172886,
19174928-19175183,19177187-19177325
Length = 628
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 101 IRPKIFFFEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAA 274
+ P +F +Y G P+ S S R Q++ +WL Q+P+ S R +
Sbjct: 383 VYPDVFMTNLYYGGTRIAGDPSNCSSPAAVSTVRKQIASHISLWLSQCQEPTSSRRTS 440
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 27.9 bits (59), Expect = 7.2
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Frame = +3
Query: 336 QNEIDIVNARF---RNGDPVYKHPMIPGYEGFSGHVPYGFQ-RFGESSKKLTN---SALC 494
+ EI+I++ F NG PV +PM ++ G G + G SK L +AL
Sbjct: 149 EEEINILDENFGAKSNGVPVI-YPMNGHFQNGHGVASNGLDGKAGFVSKSLEGRAVAALN 207
Query: 495 DFSSNYRRRQSTEWAPVNVVKPDPPLSI 578
F N + W + PDPP +
Sbjct: 208 KFGQNAKMTSDPMWMKKALPPPDPPAMV 235
>01_01_0018 + 139150-140415
Length = 421
Score = 27.9 bits (59), Expect = 7.2
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = +1
Query: 142 WI*SVSPNRIIFLGTRV---IVPSTSIGSAIRMARQHTRSFSIRACS-IQRGWCYPIERP 309
W + S NR I L T + I + S + + H CS + C +++P
Sbjct: 86 WASAQSHNRCIILDTDIAEAIASTESYDFLVDILHNHREKHKSTPCSTLTTKRCRLVDQP 145
Query: 310 MTSRSTVQHRTR*TS*THVSVMAIPFT 390
TSR QH+ + T+ AIP T
Sbjct: 146 STSRPPYQHQLPLFAPTYTP--AIPIT 170
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 381 PVYKHPMIPGYEGFSGHVPYGFQRFGESSKK 473
P Y HP I E + +P F++ GE+ K+
Sbjct: 266 PCYHHPEIQELEFKNSSLPSSFRKLGETEKR 296
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 544 TGAHSVLCLLR*FDEKSQRAELVSFFDDSP 455
+G H LC ++ D + +RA L +FF + P
Sbjct: 44 SGCHCFLCAIKEPDARLRRASLAAFFRELP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,560,942
Number of Sequences: 37544
Number of extensions: 412158
Number of successful extensions: 1036
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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