Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c09
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-1|AAG00009.2|  118|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z81565-3|CAH60773.1|  489|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81565-2|CAB04581.1|  507|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>U41538-1|AAG00009.2|  118|Caenorhabditis elegans Hypothetical
           protein R04E5.7 protein.
          Length = 118

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 255 LDPSVQHSERLVLSDRTADDFQIYRPAQNEIDIVNAR 365
           ++  VQ++ERL L  +T   F +   AQNE D  N +
Sbjct: 73  INVQVQNNERLDLDPKTCSQFSLPEVAQNEGDTFNVQ 109


>Z81565-3|CAH60773.1|  489|Caenorhabditis elegans Hypothetical
           protein K06G5.1b protein.
          Length = 489

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 122 FEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGA 292
           F +YNG           ++      ++   S  +Y++++ TQD + S  A +   GA
Sbjct: 87  FTLYNGKVADNSTKITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGA 143


>Z81565-2|CAB04581.1|  507|Caenorhabditis elegans Hypothetical
           protein K06G5.1a protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = +2

Query: 122 FEIYNGSGFSQYRPTALYSWVHGSLSRVQVSDRRYVWLDNTQDPSRSERAAFREAGA 292
           F +YNG           ++      ++   S  +Y++++ TQD + S  A +   GA
Sbjct: 87  FTLYNGKVADNSTKITTFTVADSGTTKSYTSSTQYIYVEYTQDNATSPNAYYGSIGA 143


>Z78015-5|CAB01432.2|  258|Caenorhabditis elegans Hypothetical
           protein R02D5.3 protein.
          Length = 258

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 169 IIFLGTRVIVPSTSIGSAIRMARQHTRSFS 258
           +IFL TR  V  +SIGSAIR+     RS S
Sbjct: 145 LIFLSTRDQVVYSSIGSAIRIDDSIIRSIS 174


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/58 (34%), Positives = 23/58 (39%)
 Frame = -3

Query: 387 KRDRHYGNVRSRCLSRSVLDGRSGSHRPFYRIAPASLNAARSDREGSCVLSSHTYRRS 214
           KR R     RSR  SRS    RSGS R   R +    +     R  S    +   RRS
Sbjct: 124 KRSRSRSRSRSRSRSRSYSRSRSGSRRSSRRRSRRRSSLKARGRRASTAKKTPAKRRS 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,906,075
Number of Sequences: 27780
Number of extensions: 356238
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)