Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c08
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042     31   1.2  
12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977     30   2.0  
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    29   4.7  
11_01_0449 - 3473662-3475049,3476026-3476128,3476215-3476439,347...    28   8.1  
01_06_0499 + 29823578-29823754,29823882-29824002,29825103-298252...    28   8.1  

>04_03_0757 + 19316949-19317892,19318403-19318430,19318932-19319042
          Length = 360

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = -1

Query: 459 VAKLVCLLLSFCVQFRLLVAGTIKYL-IFFL*YGHA-GSSQPSTSASRRTGPPSRNTSSP 286
           +A+    LL + + F ++++  ++Y  IF L +G   GS + + S++    PP R +SSP
Sbjct: 1   MARWTLRLLLWVLAFGVILSQLLRYATIFALAFGFGDGSRRRTLSSASSLPPPWRPSSSP 60

Query: 285 MISLRAQANRQ 253
           + + R++  R+
Sbjct: 61  ISAERSRRQRR 71


>12_02_1077 - 25871439-25871453,25872805-25872867,25872976-25873977
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 408 LVAGTIKYLIFFL*YGHAGSSQPSTSASRRTGPPSRNTS-SPMISLRAQ 265
           L AG    L+  +  G + ++ PST+A  RT  PSR+ S + M+ L A+
Sbjct: 281 LAAGVDDLLVVSIGSGSSSAATPSTAAGWRTPLPSRSPSPAEMVRLTAE 329


>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 366 YGHAGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTAT 235
           +  A  + PS  +  R   P+R  S+P+  L+    RQG    T
Sbjct: 354 HARAAETPPSKCSLERASQPTRRASTPVNMLQTPEKRQGADILT 397


>11_01_0449 -
           3473662-3475049,3476026-3476128,3476215-3476439,
           3476689-3476856,3477414-3477529,3477640-3477792,
           3477879-3478022,3478980-3479583
          Length = 966

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 419 SSVFSWRVPLST*YSFCNTDTPVRHSPVLQLHVGLGRRPATLHLL*SVFVRKP 261
           S + S  +PL+  +SF    +P+    ++ LH   GR PA  H   S  +  P
Sbjct: 521 SDLPSLHLPLALAFSFLADPSPLPRRLLVVLHAAGGRYPAFYHAFASALLSLP 573


>01_06_0499 +
           29823578-29823754,29823882-29824002,29825103-29825227,
           29825338-29825432,29825890-29825994,29826103-29826899,
           29827100-29827154,29827930-29828035,29828126-29828268,
           29828816-29829038
          Length = 648

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = -1

Query: 357 AGSSQPSTSASRRTGPPSRNTSSPMISLRAQANRQGPQTATAHTAA 220
           AG+S  STSAS R  PP+R+    +  L A  ++Q P    +H AA
Sbjct: 2   AGAS--STSASARATPPARS----LPPLGASGSQQEPAATASHHAA 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,491,395
Number of Sequences: 37544
Number of extensions: 259267
Number of successful extensions: 673
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)