Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c06
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    23   6.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    23   6.7  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    23   8.8  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 282 FKLNTIYCSSRYLWPP 235
           FK++   CS RY +PP
Sbjct: 366 FKISVRVCSQRYPYPP 381


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -3

Query: 176 KTSHGQCKINKMYFFSYY--*HFLWNLILIKYCILGSTSSL 60
           +T  G C +   YF SYY   +FL + + + Y +    SSL
Sbjct: 350 RTILGSCVLIFTYFMSYYIFSNFLTSFLQVSYGLSIDMSSL 390


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 232 ESRYCCPILRHWNE 191
           E R+C   LRHW++
Sbjct: 603 EVRHCSQTLRHWHD 616


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,090,738
Number of Sequences: 5004
Number of extensions: 18023
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)