Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c06
         (289 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938...    25   7.4  
09_01_0106 + 1673737-1674522,1674625-1675089                           25   9.8  

>07_03_1298 -
           25592788-25592890,25593126-25593229,25593747-25593808,
           25593957-25594065,25594215-25594355,25594707-25594769,
           25594974-25595084,25596140-25596457
          Length = 336

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 116 SVSNTKKSTFYLFYIDHGWS 175
           S+   KK +FY+F ID  W+
Sbjct: 40  SLKKKKKKSFYVFAIDGAWA 59


>09_01_0106 + 1673737-1674522,1674625-1675089
          Length = 416

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 IRKKVHFIYFTLTMAGLEPTWTS 194
           I KK H     LTMA L P+WTS
Sbjct: 183 IAKKDHGEVGDLTMAVLMPSWTS 205


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,502,736
Number of Sequences: 37544
Number of extensions: 98430
Number of successful extensions: 161
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)