Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c06
         (289 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical p...    26   5.0  
Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical p...    26   5.0  
AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.     26   5.0  
Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z82272-8|CAB05223.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 WNLILIKYCILGSTSSLL*ICTFQ 39
           W+L+L    + G  +SL+ IC F+
Sbjct: 27  WDLVLATIAVFGVVASLILICNFR 50


>Z82260-13|CAB05143.1|  337|Caenorhabditis elegans Hypothetical
           protein F55G11.1 protein.
          Length = 337

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 110 WNLILIKYCILGSTSSLL*ICTFQ 39
           W+L+L    + G  +SL+ IC F+
Sbjct: 27  WDLVLATIAVFGVVASLILICNFR 50


>Z30423-12|CAA83006.2|  486|Caenorhabditis elegans Hypothetical
           protein T20G5.6 protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 152 INKMYFFSYY*HFLWNLILIKYCI 81
           ++++ FF+   H + NLI++ YC+
Sbjct: 224 VSRLSFFNAISHLIVNLIMVLYCL 247


>AF031935-1|AAB87066.1|  486|Caenorhabditis elegans UNC-47 protein.
          Length = 486

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 152 INKMYFFSYY*HFLWNLILIKYCI 81
           ++++ FF+   H + NLI++ YC+
Sbjct: 224 VSRLSFFNAISHLIVNLIMVLYCL 247


>Z47075-5|CAA87378.1|  402|Caenorhabditis elegans Hypothetical
           protein E02H1.3 protein.
          Length = 402

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 135 KVHFIYFTLTMAGLEPTWTSFQCLS 209
           KVH      T+ GL+ TW ++Q  S
Sbjct: 307 KVHDYTLKSTVTGLQKTWATYQARS 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,972,025
Number of Sequences: 27780
Number of extensions: 98607
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)