Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c05
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    29   2.5  
U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 557 WVPISSVSLNTRIMSFLTLSEKFL 486
           WVP+S+V++N  ++ ++  S KF+
Sbjct: 188 WVPVSAVTVNVSMILYIKFSRKFI 211


>U40801-6|AAO91729.1|  450|Caenorhabditis elegans Hypothetical
           protein F28E10.1d protein.
          Length = 450

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 385 RSPEHAARAALYTRYTQYEWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQ 564
           RS  HAA      R TQY   + ++    + DA R+  + +++ + ++ R  +E+G  G 
Sbjct: 360 RSSNHAAAQNNANRNTQYI--ETSLDR--QIDAGRSEVQDIKSQLQKLNRLVNEMGVSGW 415

Query: 565 RDSGRRIGRKN 597
            +   R+ R+N
Sbjct: 416 EEELTRLRREN 426


>U40801-3|AAV34792.1| 1134|Caenorhabditis elegans Hypothetical protein
            F28E10.1a protein.
          Length = 1134

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +1

Query: 385  RSPEHAARAALYTRYTQYEWNQNTIKNYNESDAKRNFSERVRNDIMRVLRETDEIGTQGQ 564
            RS  HAA      R TQY   + ++    + DA R+  + +++ + ++ R  +E+G  G 
Sbjct: 1044 RSSNHAAAQNNANRNTQYI--ETSLDR--QIDAGRSEVQDIKSQLQKLNRLVNEMGVSGW 1099

Query: 565  RDSGRRIGRKN 597
             +   R+ R+N
Sbjct: 1100 EEELTRLRREN 1110


>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 354 PVPEPSDRLRPQPRARGPSSSL 419
           PVP+P    RP PR   P S L
Sbjct: 355 PVPQPQQATRPAPRPVAPKSHL 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,222,801
Number of Sequences: 27780
Number of extensions: 331683
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)