Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c02
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical ...    31   0.99 
AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacti...    29   2.3  
U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U58750-4|AAB00644.1|  309|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF022982-5|AAB69936.2|  799|Caenorhabditis elegans Hypothetical
           protein T23B12.4 protein.
          Length = 799

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = +3

Query: 414 YAERSALWKAAAATESEP*PYIWLASISPLRCWRRRASGPACWP---KLPPRCKRSDTAV 584
           YAE   L + A         Y+WL +  P  C R     PAC+P   K+P R + +D  V
Sbjct: 331 YAETVKLGRRAPDNIDGDGDYLWLGAYEPKTCIRMI---PACFPRKIKVPSRQEAADWWV 387

Query: 585 DC 590
            C
Sbjct: 388 KC 389


>AF016672-8|AAB66117.4|  998|Caenorhabditis elegans Jnk interacting
           protein (scaffoldprotein) protein 1 protein.
          Length = 998

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 360 HNNCSTGVSGLDSTERL*YAERSA 431
           + NCS+GVS LD TE   Y+ R A
Sbjct: 450 NENCSSGVSQLDETENQAYSTRQA 473


>U80837-3|AAB37904.2|  384|Caenorhabditis elegans Hypothetical
           protein F07E5.5 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 289 VGYISRIL--TIGGVSHDGGCC-AAQDTTTARRESP 387
           VG+ISR     + GV  DGGCC      T  RR+ P
Sbjct: 288 VGHISRDCHQNVNGVYPDGGCCNVCGANTHLRRDCP 323


>U58750-4|AAB00644.1|  309|Caenorhabditis elegans Hypothetical
           protein F55G1.5 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 115 FPAAVISQRVR-QSGTSKIADLEDCFRR 35
           FP  ++  R++ Q GTSK   + DCF++
Sbjct: 39  FPMDLVKTRLQNQKGTSKYTGIADCFKK 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,512,300
Number of Sequences: 27780
Number of extensions: 273185
Number of successful extensions: 773
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)