Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c01
         (469 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          28   0.62 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.1  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   3.3  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.8  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   7.6  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 28.3 bits (60), Expect = 0.62
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 68  QHCILLENKLIFKYDFQEYFFSFETLA-TKNNNEI 169
           +HC++ ++K+I +  F +  F+F   A  +NNN I
Sbjct: 318 KHCVITDHKMIVREQFGDLSFTFPAGAFFQNNNSI 352


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 182 FVSYLFHCCFLLQVFRKKKNI 120
           FVS++F C F+  +F K +N+
Sbjct: 557 FVSFMFFCAFVCSMFIKNRNL 577


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 246 IAFLLYYLCNTRCIVSLILFVVCKLFISLLFFV 148
           ++F + +  ++    SLILF+V K  +S LFF+
Sbjct: 11  LSFFISFTFSSIFFSSLILFLVYKSVLSKLFFI 43


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 424 LLLFLRLKLSDHISNINFTKISL 356
           LLL+ R++LSD +  + +T +SL
Sbjct: 924 LLLYERIQLSDALFQLGYTTVSL 946


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 7.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 131 SFETLATKNNNEINSLQTTNKIRLTMHRVL 220
           S +   T  NN INS  + +++ L+ +RVL
Sbjct: 380 SSKVFLTTRNNSINSEDSAHEVLLSYNRVL 409


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,173
Number of Sequences: 5004
Number of extensions: 32520
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)