Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24c01
         (469 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    27   5.7  
08_01_0683 + 5991905-5992055,5993262-5993451,5993701-5993772,599...    27   7.5  

>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 282 IL*IIL*KSKFVIAFLLYYLCNTRCIVSLILFVVCKLFISLLF 154
           +L I++ KS + ++F   YLC  +  +SL +  V    I +LF
Sbjct: 329 LLIIVMCKSHYHVSFCRLYLCEHKYFLSLFVPYVASANIVMLF 371


>08_01_0683 +
           5991905-5992055,5993262-5993451,5993701-5993772,
           5994016-5994084,5994189-5994260,5994440-5994511,
           5994623-5994694,5994777-5994848,5995276-5995347,
           5995452-5995526,5995929-5996005,5996417-5996781,
           5996872-5997070,5997151-5997309,5997391-5997509,
           5997624-5997641,5997701-5997851,5997959-5998190,
           5998272-5998422,5998517-5998876
          Length = 915

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -1

Query: 451 VFNIVSVCTLLLFLRLKLSDHISNINFTKIS-LNI 350
           + N+ S+  L+L    K+SD++  +NFTK+S LN+
Sbjct: 272 ISNLTSLNVLIL-RNCKISDNLGAVNFTKLSRLNL 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,836,359
Number of Sequences: 37544
Number of extensions: 142250
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)