Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b24
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   2.5  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   5.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   10.0 

>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 41  RHYDLNQAKELFEIFV-KEHNREYKDDADRELHYQSFKKHLAE 166
           RH D N  +   E    ++ +REYK D   +  +   +KHL E
Sbjct: 238 RHEDRNSYRNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRE 280


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 89  KEHNREYKD-DADRELHYQSFKKHLAE 166
           K+ NREYK+ D   E  Y   +K L E
Sbjct: 6   KDRNREYKEKDRRYEKLYNEKEKLLEE 32


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 75  SKFSSKNITGNTRMMPTESCI 137
           +K+    IT + R++PT +CI
Sbjct: 378 AKYLRACITESLRLIPTTTCI 398


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 128  LCRHHPCIPC 99
            LC HH  +PC
Sbjct: 1097 LCLHHRDLPC 1106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,848
Number of Sequences: 438
Number of extensions: 2156
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)