Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b23
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   4.1  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   7.1  
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    25   7.1  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    24   9.4  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    24   9.4  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    24   9.4  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    24   9.4  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 26   MFYTIARLPIDFSSFVILNKYLGLWRCH 109
            + Y  + L I  SSF+  N YL LW  H
Sbjct: 1996 LLYCASFLLIGISSFINENMYLRLWISH 2023


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 260 FGVPMTGFFIGKFLDDQETLRMTSFRD 340
           F VP++   +  +LDD+   R   FRD
Sbjct: 303 FNVPLSERIVECYLDDENRWRFLRFRD 329


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 345 DLSRKLVILKVSWSSRNLPMKNPVIGTPNQMKRGVMP 235
           D+ R   ILK    SR +    P I  P Q K G+MP
Sbjct: 136 DMLRVSDILKTQSKSRLVGPNCPGIIRPGQCKIGIMP 172


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 195 VESSTDQSIKWPSSASLLASFGLVFR*QGSS 287
           +ESS+      PS++ LL SF   F   GSS
Sbjct: 327 IESSSSPLRSGPSTSGLLDSFTSAFHTSGSS 357


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +3

Query: 84  NTSVYGVVTVPASESCEHSLSHHKHYAYFS*LEPHSQVESSTDQSIKWPSSASLLAS 254
           N+S   +    + +S +       H    S L PH+Q+    D  +  PSS S  +S
Sbjct: 134 NSSPASIAKKTSRDSKKRKREDLVHCPACSNLVPHNQINQHLDSCLNSPSSPSSSSS 190


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 240 MPKMAILYFDLLSFPLASVVPVKKNKRNAYG 148
           + K+AI +FD     +A  +PVKK K +A G
Sbjct: 25  LSKLAISFFDQKKNKMADSIPVKK-KGSAKG 54


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 195 LASVVPVKKNKRNAYGGKDYAHKIP 121
           L  ++P  ++    YGG + A K+P
Sbjct: 636 LEGIIPALESSHAVYGGMELAKKLP 660


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,600
Number of Sequences: 5004
Number of extensions: 41670
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)