Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b22
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   2.8  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   8.6  
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    25   8.6  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   8.6  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 102  ISARWTM*RTVSYLDIYICEE 40
            +S RW   R++  +D YIC+E
Sbjct: 1473 LSKRWRSMRSIQKVDFYICDE 1493


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 207 NMININNLNKKQSNGLHITNLS*ISNLDHFPYFLGIS 97
           NMI +NNL   +   +   NL+ + NL    +  G+S
Sbjct: 101 NMIRMNNLATPELTSVGSLNLAVLPNLQELQFNAGLS 137


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 283 VRDIDYYQKNANKNTLNKPH 224
           VRD+DY   N +  T+ +PH
Sbjct: 101 VRDLDYELDNGHFRTIQEPH 120


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 447 KEEKELVKKRASLKGRLTTFRK 512
           KE KELV +   L+ R+  FRK
Sbjct: 71  KEAKELVFREVQLRHRINEFRK 92


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,245
Number of Sequences: 5004
Number of extensions: 43162
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)