Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b22
         (613 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set (trithorax/...    28   6.0  

>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +3

Query: 444 EKEEKELVKKRASLKGRLTTFRKYIEE------LSGTLNQQQVNELQLRIGKIELLFEQY 605
           EKE + L  +   LK R+ +  K +++      ++ +LN++ +NEL L    IE L +Q+
Sbjct: 42  EKENENLADENEILKTRIASLEKDVKQEKNATKMAKSLNEETINELTLSEDLIESLKKQF 101


>Z30662-2|CAA83135.1|  181|Caenorhabditis elegans Hypothetical
           protein T16H12.2 protein.
          Length = 181

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 284 CERHRLLPKKCQQKHIK 234
           CE+H ++ + CQQ H+K
Sbjct: 108 CEKHHIVCRTCQQSHVK 124


>U00064-2|AAD31934.2|  329|Caenorhabditis elegans Hypothetical
           protein ZC155.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = +3

Query: 435 EMSEKEEKELVKKRASLKGRLTTFRKYIEELSGTLNQQQVNELQLR 572
           E  EKEEK++ +    +   LT  ++ I  +SG+ N+++  + +LR
Sbjct: 115 EAFEKEEKQMEQTTEQITQMLTHCQRLIRMISGSHNKEKPMQRKLR 160


>U41508-2|AAN39665.2|  552|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 20,
           isoform b protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/50 (30%), Positives = 29/50 (58%)
 Frame = +3

Query: 435 EMSEKEEKELVKKRASLKGRLTTFRKYIEELSGTLNQQQVNELQLRIGKI 584
           +++EKE + + + +++L GR  + R Y+EE       Q+  E + +I KI
Sbjct: 143 QLAEKEYERIGELQSALIGRANSGRCYLEEKRKRSTLQRRREARKKIEKI 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,238,021
Number of Sequences: 27780
Number of extensions: 229224
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)