Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte24b22
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 57  YLNKKPSAT*SIEPRYPGNKGSDPS 131
           + N   +A  S  P YPG   S PS
Sbjct: 68  WFNDSAAAITSTSPSYPGGGSSSPS 92


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 33  NLPPHKYKYLN 65
           +LP +KYKYLN
Sbjct: 317 SLPYYKYKYLN 327


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 33  NLPPHKYKYLN 65
           +LP +KYKYLN
Sbjct: 317 SLPYYKYKYLN 327


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 528  SGTLNQQQVNELQLRIGKIELLFEQ 602
            +GT++QQ+     ++ GK+ ++ E+
Sbjct: 1082 AGTVSQQKQKRRMVKYGKLVMIHEE 1106


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 432 KYLGRSGLVNLALIEVTIEIMNYN 361
           KYL  + ++N   I VT+ I+N+N
Sbjct: 298 KYLLFTFIMNTVSILVTVIIINWN 321


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 170  VMGYTSLICPEYQTWITSLIS 108
            + GYT    PE+  W T+ IS
Sbjct: 1396 IHGYTIHYKPEFGDWDTAQIS 1416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,858
Number of Sequences: 438
Number of extensions: 3513
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)